MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:17.7 nTPM
GTEx:22.4 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:0.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
2828 Female, age 72, unknown 20.3
2586 Male, age 75, left hemisphere 15.1
1870 Female, age 42, unknown 14.7
2219 Male, age 76, both hemispheres 14.5
1830 Male, age 51, unknown 14.4
2019 Male, age 18, unknown 14.0
2411 Female, age 72, unknown 13.8
2666 Male, age 74, left hemisphere 13.7
1827 Male, age 72, unknown 13.3
1833 Male, age 53, unknown 13.0
Dorsal raphe nucleus
nTPM: 17.7
2047 Male, age 72, unknown 20.2
2016 Female, age 72, unknown 19.6
1828 Male, age 53, unknown 19.0
2298 Female, age 72, unknown 17.1
2750 Male, age 76, both hemispheres 12.9
Inferior colliculus
nTPM: 13.9
1890 Male, age 53, unknown 14.7
1848 Female, age 42, unknown 14.4
2097 Female, age 72, unknown 13.3
2849 Male, age 72, unknown 13.2
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 14.4
1947 Male, age 18, unknown 15.7
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 16.2
2850 Male, age 76, both hemispheres 18.3
1840 Male, age 53, unknown 17.0
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 14.1
Periaquaductal grey, lateral
nTPM: 15.7
2140 Male, age 76, both hemispheres 17.6
2053 Male, age 18, unknown 16.9
2272 Male, age 74, both hemispheres 12.5
Pretectal area
nTPM: 14.4
2273 Male, age 74, both hemispheres 20.3
2316 Male, age 76, right hemisphere 17.8
2667 Female, age 75, unknown 15.3
2825 Male, age 18, unknown 15.0
2224 Female, age 72, unknown 14.7
1944 Female, age 72, unknown 13.9
1817 Female, age 42, unknown 13.6
2407 Male, age 75, both hemispheres 13.3
1816 Male, age 51, unknown 12.7
1815 Male, age 53, unknown 12.3
2007 Male, age 72, unknown 9.9
Red nucleus
nTPM: 15.4
1821 Female, age 72, unknown 18.9
1865 Male, age 51, unknown 17.0
2769 Male, age 72, unknown 16.8
2227 Male, age 72, unknown 16.7
1954 Female, age 42, unknown 15.8
2725 Female, age 75, unknown 15.4
2503 Female, age 72, unknown 15.3
1904 Male, age 53, unknown 14.8
2588 Male, age 74, left hemisphere 14.7
2823 Male, age 76, right hemisphere 14.6
2785 Male, age 18, unknown 13.1
2584 Male, age 75, left hemisphere 11.2
Substantia nigra
nTPM: 16.8
2699 Male, age 18, unknown 21.2
1851 Male, age 51, unknown 19.2
2409 Female, age 72, unknown 18.8
2583 Male, age 75, right hemisphere 16.8
2590 Female, age 75, unknown 16.8
1941 Male, age 53, unknown 15.6
1916 Female, age 42, unknown 15.2
2665 Male, age 74, both hemispheres 15.1
2241 Male, age 72, unknown 14.9
1889 Female, age 72, unknown 14.1
Superior colliculus
nTPM: 14.2
1995 Male, age 72, unknown 19.5
2587 Male, age 74, left hemisphere 15.8
1913 Female, age 42, unknown 15.2
1796 Male, age 53, unknown 13.9
1839 Male, age 51, unknown 13.7
2087 Female, age 72, unknown 13.6
1895 Male, age 76, right hemisphere 13.4
2668 Female, age 75, unknown 13.2
2664 Male, age 75, both hemispheres 13.1
2261 Male, age 18, unknown 10.6
Ventral tegmental area
nTPM: 14.7
2021 Male, age 53, unknown 17.3
2410 Female, age 72, unknown 15.8
1915 Female, age 42, unknown 15.5
1942 Male, age 51, unknown 14.0
2223 Female, age 72, unknown 13.8
2218 Male, age 76, both hemispheres 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 139

Max nTPM: 51.2
Min nTPM: 8.9
Std nTPM: 7.4
Median nTPM: 21.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 51.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 41.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 39.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 39.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 38.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 37.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 34.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 34.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 34.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.7
Sample C Male 7.4
Sample D Male 9.6
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.9
Sample A Female 8.5
Sample B Female 7.4
Sample C Male 6.9
Sample D Male 6.9
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 8.3
Min nTPM: 6.8
Sample B Female 8.3
Sample C Male 6.8
Sample D Male 7.7
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 6.2
Sample C Male 7.5
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Male 1.0
Sample B Male 0.7
Sample C Female 1.1
Sample D Female 0.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
100144117 Antisense, RP_110421_01_C11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org