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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35D2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
97.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
94.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
93.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
92.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
90.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
87.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
86.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
85.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
83.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
81.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
80.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
79.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
79.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
77.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
77.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
71.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
71.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
70.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
67.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
62.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
60.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
53.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
52.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
51.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
49.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
49.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
45.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
37.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
29.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35D2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.7
Number of samples
231
Samples
Sample
Description
TPM
DO45265
0 years, male, NA, stage:3, alive, 1020 days
119.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
96.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
90.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
85.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
79.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
77.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
75.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
74.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
70.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
70.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
66.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
66.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
64.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
61.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
61.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
59.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
57.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
56.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
52.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
51.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
49.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
49.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
49.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
45.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
39.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
34.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
2.0
227
Tumor
1.8
537
Tumor
1.7
285
Tumor
1.2
965
Tumor
1.1
975
Tumor
1.0
517
Tumor
1.0
221
Tumor
1.0
223
Tumor
0.9
641
Tumor
0.9
563
Tumor
0.9
967
Tumor
0.8
545
Tumor
0.7
533
Tumor
0.7
963
Tumor
0.6
745
Tumor
0.6
191
Tumor
0.6
493
Tumor
0.5
497
Tumor
0.4
277
Tumor
0.4
617
Tumor
0.4
483
Tumor
0.4
353
Tumor
0.3
546
Normal
0.3
957
Tumor
0.3
524
Normal
0.3
755
Tumor
0.3
525
Tumor
0.3
283
Tumor
0.3
534
Normal
0.3
557
Tumor
0.3
785
Tumor
0.2
358
Normal
0.2
571
Tumor
0.2
564
Normal
0.2
538
Normal
0.2
554
Normal
0.2
526
Normal
0.1
354
Normal
0.1
352
Normal
0.1
342
Normal
0.1
487
Tumor
0.1
213
Tumor
0.1
351
Tumor
0.1
976
Normal
0.1
494
Normal
0.1
635
Tumor
0.1
523
Tumor
0.0
528
Normal
0.0
228
Normal
0.0
298
Normal
0.0
196
Normal
0.0
567
Tumor
0.0
212
Normal
0.0
284
Normal
0.0
964
Normal
0.0
217
Tumor
-0.1
341
Tumor
-0.1
344
Normal
-0.1
332
Normal
-0.1
966
Normal
-0.1
572
Normal
-0.1
498
Normal
-0.1
492
Normal
-0.1
367
Tumor
-0.1
778
Normal
-0.1
214
Normal
-0.1
642
Normal
-0.1
488
Normal
-0.2
484
Normal
-0.2
746
Normal
-0.2
361
Tumor
-0.2
312
Normal
-0.2
357
Tumor
-0.2
314
Normal
-0.2
518
Normal
-0.2
286
Normal
-0.2
574
Normal
-0.2
224
Normal
-0.2
558
Normal
-0.2
297
Tumor
-0.2
515
Tumor
-0.2
218
Normal
-0.3
618
Normal
-0.3
958
Normal
-0.3
573
Tumor
-0.3
195
Tumor
-0.3
636
Normal
-0.3
331
Tumor
-0.4
756
Normal
-0.4
383
Tumor
-0.4
384
Normal
-0.4
516
Normal
-0.4
362
Normal
-0.4
514
Normal
-0.4
311
Tumor
-0.4
376
Normal
-0.4
786
Normal
-0.4
968
Normal
-0.5
278
Normal
-0.5
375
Tumor
-0.5
366
Normal
-0.5
365
Tumor
-0.5
568
Normal
-0.6
222
Normal
-0.6
491
Tumor
-0.6
616
Normal
-0.6
527
Tumor
-0.6
313
Tumor
-0.7
814
Normal
-0.7
628
Normal
-0.7
777
Tumor
-0.8
1031
Tumor
-0.8
813
Tumor
-0.8
615
Tumor
-0.8
343
Tumor
-0.9
1021
Tumor
-0.9
1042
Normal
-1.1
1032
Normal
-1.1
192
Normal
-1.3
211
Tumor
-1.3
513
Tumor
-1.4
1026
Normal
-1.4
368
Normal
-1.4
1028
Normal
-1.5
627
Tumor
-1.6
1025
Tumor
-2.3
1041
Tumor
-2.7
1027
Tumor
-2.7
1022
Normal
-3.4
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
474
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
