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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HIP1R is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HIP1R is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
105.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
99.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
73.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
70.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
68.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
68.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
54.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.4
957
Tumor
1.1
865
Tumor
1.0
497
Tumor
0.9
257
Tumor
0.9
395
Tumor
0.9
573
Tumor
0.9
937
Tumor
0.8
915
Tumor
0.8
533
Tumor
0.7
925
Tumor
0.7
425
Tumor
0.7
513
Tumor
0.6
647
Tumor
0.6
327
Tumor
0.6
451
Tumor
0.6
283
Tumor
0.6
953
Tumor
0.5
785
Tumor
0.5
123
Tumor
0.5
557
Tumor
0.5
171
Tumor
0.5
545
Tumor
0.5
553
Tumor
0.4
867
Tumor
0.4
313
Tumor
0.4
223
Tumor
0.4
493
Tumor
0.4
737
Tumor
0.4
125
Tumor
0.4
435
Tumor
0.4
921
Tumor
0.4
916
Normal
0.3
1045
Tumor
0.3
663
Tumor
0.3
471
Tumor
0.3
131
Tumor
0.3
137
Tumor
0.3
955
Tumor
0.3
383
Tumor
0.3
1022
Normal
0.3
981
Tumor
0.3
911
Tumor
0.3
443
Tumor
0.3
745
Tumor
0.2
616
Normal
0.2
231
Tumor
0.2
416
Normal
0.2
268
Normal
0.2
355
Tumor
0.2
857
Tumor
0.2
617
Tumor
0.2
1043
Tumor
0.2
956
Normal
0.2
852
Normal
0.2
627
Tumor
0.2
135
Tumor
0.2
261
Tumor
0.2
918
Normal
0.2
341
Tumor
0.2
356
Normal
0.2
213
Tumor
0.2
284
Normal
0.2
361
Tumor
0.2
755
Tumor
0.2
628
Normal
0.2
188
Normal
0.2
448
Normal
0.2
527
Tumor
0.2
262
Normal
0.2
145
Tumor
0.2
743
Tumor
0.2
461
Tumor
0.1
228
Normal
0.1
978
Normal
0.1
474
Normal
0.1
671
Tumor
0.1
1042
Normal
0.1
478
Normal
0.1
212
Normal
0.1
525
Tumor
0.1
518
Normal
0.1
473
Tumor
0.1
958
Normal
0.1
455
Tumor
0.1
964
Normal
0.1
721
Tumor
0.1
285
Tumor
0.1
492
Normal
0.1
723
Tumor
0.1
563
Tumor
0.1
1027
Tumor
0.1
864
Normal
0.1
1028
Normal
0.1
297
Tumor
0.1
728
Normal
0.1
362
Normal
0.1
328
Normal
0.1
375
Tumor
0.1
427
Tumor
0.1
966
Normal
0.1
1013
Tumor
0.1
472
Normal
0.1
314
Normal
0.1
534
Normal
0.1
1025
Tumor
0.1
447
Tumor
0.1
514
Normal
0.1
648
Normal
0.1
272
Normal
0.1
866
Normal
0.1
481
Tumor
0.1
384
Normal
0.1
696
Normal
0.1
422
Normal
0.1
494
Normal
0.1
777
Tumor
0.1
312
Normal
0.1
286
Normal
0.1
861
Tumor
0.1
414
Normal
0.1
482
Normal
0.1
445
Tumor
0.0
635
Tumor
0.0
535
Tumor
0.0
546
Normal
0.0
722
Normal
0.0
952
Normal
0.0
258
Normal
0.0
1015
Tumor
0.0
778
Normal
0.0
1046
Normal
0.0
412
Normal
0.0
222
Normal
0.0
554
Normal
0.0
564
Normal
0.0
738
Normal
0.0
421
Tumor
0.0
874
Normal
0.0
528
Normal
0.0
1044
Normal
0.0
393
Tumor
0.0
574
Normal
0.0
537
Tumor
0.0
424
Normal
0.0
515
Tumor
0.0
1014
Normal
0.0
1026
Normal
0.0
924
Normal
0.0
917
Tumor
0.0
558
Normal
0.0
975
Tumor
0.0
128
Normal
0.0
756
Normal
0.0
983
Tumor
0.0
436
Normal
0.0
432
Normal
0.0
487
Tumor
0.0
456
Normal
0.0
364
Normal
0.0
218
Normal
0.0
466
Normal
0.0
426
Normal
0.0
232
Normal
0.0
572
Normal
0.0
187
Tumor
0.0
278
Normal
0.0
444
Normal
0.0
498
Normal
0.0
868
Normal
0.0
714
Normal
0.0
136
Normal
0.0
716
Normal
0.0
538
Normal
0.0
524
Normal
0.0
536
Normal
0.0
365
Tumor
0.0
944
Normal
0.0
968
Normal
0.0
1032
Normal
0.0
434
Normal
0.0
161
Tumor
0.0
415
Tumor
0.0
484
Normal
0.0
982
Normal
0.0
462
Normal
0.0
862
Normal
0.0
664
Normal
0.0
526
Normal
0.0
816
Normal
0.0
922
Normal
0.0
1016
Normal
0.0
126
Normal
0.0
976
Normal
0.0
618
Normal
-0.1
433
Tumor
-0.1
742
Normal
-0.1
224
Normal
-0.1
977
Tumor
-0.1
516
Normal
-0.1
464
Normal
-0.1
568
Normal
-0.1
446
Normal
-0.1
1021
Tumor
-0.1
824
Normal
-0.1
641
Tumor
-0.1
428
Normal
-0.1
396
Normal
-0.1
358
Normal
-0.1
162
Normal
-0.1
463
Tumor
-0.1
388
Normal
-0.1
332
Normal
-0.1
138
Normal
-0.1
662
Normal
-0.1
926
Normal
-0.1
387
Tumor
-0.1
214
Normal
-0.1
343
Tumor
-0.1
488
Normal
-0.1
642
Normal
-0.1
132
Normal
-0.1
786
Normal
-0.1
363
Tumor
-0.1
884
Normal
-0.1
746
Normal
-0.1
211
Tumor
-0.1
914
Normal
-0.1
636
Normal
-0.1
142
Normal
-0.1
686
Normal
-0.1
1041
Tumor
-0.1
938
Normal
-0.1
483
Tumor
-0.1
523
Tumor
-0.1
221
Tumor
-0.1
146
Normal
-0.1
923
Tumor
-0.1
666
Normal
-0.1
271
Tumor
-0.1
873
Tumor
-0.1
195
Tumor
-0.1
698
Normal
-0.1
1031
Tumor
-0.1
376
Normal
-0.1
386
Normal
-0.1
468
Normal
-0.1
186
Normal
-0.1
172
Normal
-0.1
277
Tumor
-0.1
353
Tumor
-0.1
858
Normal
-0.1
878
Normal
-0.1
148
Normal
-0.1
814
Normal
-0.1
943
Tumor
-0.2
571
Tumor
-0.2
882
Normal
-0.2
185
Tumor
-0.2
823
Tumor
-0.2
465
Tumor
-0.2
141
Tumor
-0.2
191
Tumor
-0.2
196
Normal
-0.2
298
Normal
-0.2
881
Tumor
-0.2
366
Normal
-0.2
954
Normal
-0.2
354
Normal
-0.2
452
Normal
-0.2
392
Normal
-0.2
818
Normal
-0.2
217
Tumor
-0.2
727
Tumor
-0.2
685
Tumor
-0.2
413
Tumor
-0.2
423
Tumor
-0.2
127
Tumor
-0.2
111
Normal
-0.2
368
Normal
-0.2
113
Tumor
-0.2
477
Tumor
-0.3
114
Normal
-0.3
672
Normal
-0.3
517
Tumor
-0.3
741
Tumor
-0.3
912
Normal
-0.3
984
Normal
-0.3
344
Normal
-0.3
124
Normal
-0.3
967
Tumor
-0.3
813
Tumor
-0.3
394
Normal
-0.3
615
Tumor
-0.3
883
Tumor
-0.3
913
Tumor
-0.3
951
Tumor
-0.3
851
Tumor
-0.4
491
Tumor
-0.4
352
Normal
-0.4
192
Normal
-0.4
267
Tumor
-0.4
724
Normal
-0.4
112
Tumor
-0.4
342
Normal
-0.4
467
Tumor
-0.5
965
Tumor
-0.5
567
Tumor
-0.5
331
Tumor
-0.5
391
Tumor
-0.5
817
Tumor
-0.5
357
Tumor
-0.5
744
Normal
-0.5
661
Tumor
-0.5
815
Tumor
-0.6
697
Tumor
-0.6
713
Tumor
-0.6
863
Tumor
-0.6
227
Tumor
-0.6
411
Tumor
-0.6
431
Tumor
-0.7
351
Tumor
-0.7
665
Tumor
-0.7
311
Tumor
-0.7
715
Tumor
-0.7
385
Tumor
-0.7
963
Tumor
-0.9
877
Tumor
-0.9
695
Tumor
-0.9
367
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
