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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM160 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
61.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
32.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM160 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
40.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.5
635
Tumor
1.3
231
Tumor
1.2
615
Tumor
1.2
365
Tumor
1.2
433
Tumor
1.1
513
Tumor
1.1
627
Tumor
1.1
1045
Tumor
1.0
465
Tumor
1.0
873
Tumor
1.0
361
Tumor
1.0
863
Tumor
1.0
112
Tumor
1.0
737
Tumor
1.0
387
Tumor
0.9
421
Tumor
0.9
661
Tumor
0.8
425
Tumor
0.8
567
Tumor
0.7
341
Tumor
0.7
1015
Tumor
0.7
865
Tumor
0.7
137
Tumor
0.6
1043
Tumor
0.6
477
Tumor
0.6
1027
Tumor
0.6
745
Tumor
0.6
127
Tumor
0.6
883
Tumor
0.5
221
Tumor
0.5
557
Tumor
0.5
497
Tumor
0.5
741
Tumor
0.5
815
Tumor
0.5
123
Tumor
0.5
1041
Tumor
0.5
492
Normal
0.5
951
Tumor
0.5
185
Tumor
0.5
911
Tumor
0.4
463
Tumor
0.4
431
Tumor
0.4
545
Tumor
0.4
267
Tumor
0.4
921
Tumor
0.4
867
Tumor
0.4
721
Tumor
0.4
353
Tumor
0.4
411
Tumor
0.4
493
Tumor
0.4
685
Tumor
0.4
955
Tumor
0.4
483
Tumor
0.4
777
Tumor
0.3
967
Tumor
0.3
277
Tumor
0.3
494
Normal
0.3
534
Normal
0.3
785
Tumor
0.3
171
Tumor
0.3
383
Tumor
0.3
473
Tumor
0.3
573
Tumor
0.3
213
Tumor
0.3
975
Tumor
0.3
491
Tumor
0.3
563
Tumor
0.3
1031
Tumor
0.3
435
Tumor
0.3
957
Tumor
0.3
755
Tumor
0.3
715
Tumor
0.3
285
Tumor
0.3
461
Tumor
0.3
823
Tumor
0.3
524
Normal
0.2
257
Tumor
0.2
488
Normal
0.2
857
Tumor
0.2
546
Normal
0.2
537
Tumor
0.2
451
Tumor
0.2
965
Tumor
0.2
525
Tumor
0.2
983
Tumor
0.2
471
Tumor
0.2
311
Tumor
0.2
553
Tumor
0.2
953
Tumor
0.2
481
Tumor
0.2
357
Tumor
0.2
647
Tumor
0.2
423
Tumor
0.2
484
Normal
0.2
498
Normal
0.2
445
Tumor
0.2
124
Normal
0.1
161
Tumor
0.1
1021
Tumor
0.1
297
Tumor
0.1
147
Tumor
0.1
533
Tumor
0.1
851
Tumor
0.1
271
Tumor
0.1
223
Tumor
0.1
526
Normal
0.1
443
Tumor
0.1
385
Tumor
0.1
391
Tumor
0.1
393
Tumor
0.1
925
Tumor
0.1
937
Tumor
0.1
388
Normal
0.1
354
Normal
0.1
363
Tumor
0.1
663
Tumor
0.0
824
Normal
0.0
641
Tumor
0.0
665
Tumor
0.0
981
Tumor
0.0
114
Normal
0.0
1013
Tumor
0.0
528
Normal
0.0
786
Normal
0.0
727
Tumor
0.0
858
Normal
0.0
861
Tumor
0.0
877
Tumor
0.0
648
Normal
0.0
446
Normal
0.0
538
Normal
0.0
367
Tumor
0.0
394
Normal
0.0
351
Tumor
0.0
328
Normal
0.0
187
Tumor
0.0
884
Normal
0.0
1025
Tumor
0.0
455
Tumor
0.0
915
Tumor
0.0
217
Tumor
0.0
432
Normal
0.0
145
Tumor
0.0
514
Normal
0.0
396
Normal
0.0
413
Tumor
0.0
1032
Normal
-0.1
436
Normal
-0.1
868
Normal
-0.1
527
Tumor
-0.1
923
Tumor
-0.1
464
Normal
-0.1
1014
Normal
-0.1
314
Normal
-0.1
716
Normal
-0.1
952
Normal
-0.1
628
Normal
-0.1
312
Normal
-0.1
278
Normal
-0.1
963
Tumor
-0.1
572
Normal
-0.1
964
Normal
-0.1
554
Normal
-0.1
778
Normal
-0.1
977
Tumor
-0.1
191
Tumor
-0.1
214
Normal
-0.1
666
Normal
-0.1
568
Normal
-0.1
395
Tumor
-0.1
142
Normal
-0.1
616
Normal
-0.1
617
Tumor
-0.1
756
Normal
-0.1
136
Normal
-0.1
352
Normal
-0.1
218
Normal
-0.1
111
Normal
-0.1
746
Normal
-0.1
192
Normal
-0.1
714
Normal
-0.1
414
Normal
-0.1
344
Normal
-0.1
938
Normal
-0.1
172
Normal
-0.1
331
Tumor
-0.1
956
Normal
-0.1
426
Normal
-0.1
386
Normal
-0.1
392
Normal
-0.1
912
Normal
-0.1
368
Normal
-0.1
515
Tumor
-0.2
135
Tumor
-0.2
332
Normal
-0.2
882
Normal
-0.2
452
Normal
-0.2
864
Normal
-0.2
517
Tumor
-0.2
816
Normal
-0.2
1046
Normal
-0.2
415
Tumor
-0.2
148
Normal
-0.2
984
Normal
-0.2
162
Normal
-0.2
422
Normal
-0.2
113
Tumor
-0.2
141
Tumor
-0.2
966
Normal
-0.2
558
Normal
-0.2
696
Normal
-0.2
1044
Normal
-0.2
818
Normal
-0.2
686
Normal
-0.2
954
Normal
-0.2
188
Normal
-0.2
466
Normal
-0.2
978
Normal
-0.2
424
Normal
-0.2
874
Normal
-0.2
128
Normal
-0.2
564
Normal
-0.2
126
Normal
-0.2
913
Tumor
-0.2
862
Normal
-0.2
1026
Normal
-0.2
222
Normal
-0.2
261
Tumor
-0.2
356
Normal
-0.2
536
Normal
-0.2
636
Normal
-0.2
358
Normal
-0.2
428
Normal
-0.2
186
Normal
-0.2
664
Normal
-0.2
723
Tumor
-0.2
922
Normal
-0.2
342
Normal
-0.2
866
Normal
-0.2
742
Normal
-0.3
434
Normal
-0.3
878
Normal
-0.3
516
Normal
-0.3
944
Normal
-0.3
232
Normal
-0.3
467
Tumor
-0.3
671
Tumor
-0.3
982
Normal
-0.3
618
Normal
-0.3
662
Normal
-0.3
968
Normal
-0.3
672
Normal
-0.3
412
Normal
-0.3
1028
Normal
-0.3
224
Normal
-0.3
196
Normal
-0.3
574
Normal
-0.3
364
Normal
-0.3
852
Normal
-0.3
724
Normal
-0.3
813
Tumor
-0.3
427
Tumor
-0.3
125
Tumor
-0.3
376
Normal
-0.3
286
Normal
-0.3
738
Normal
-0.3
817
Tumor
-0.3
195
Tumor
-0.3
258
Normal
-0.3
416
Normal
-0.3
444
Normal
-0.3
976
Normal
-0.3
384
Normal
-0.3
313
Tumor
-0.3
366
Normal
-0.3
958
Normal
-0.3
722
Normal
-0.3
1016
Normal
-0.3
138
Normal
-0.3
642
Normal
-0.3
131
Tumor
-0.3
132
Normal
-0.3
362
Normal
-0.3
1022
Normal
-0.3
448
Normal
-0.4
713
Tumor
-0.4
697
Tumor
-0.4
518
Normal
-0.4
228
Normal
-0.4
916
Normal
-0.4
284
Normal
-0.4
298
Normal
-0.4
881
Tumor
-0.4
698
Normal
-0.4
482
Normal
-0.4
943
Tumor
-0.4
1042
Normal
-0.4
814
Normal
-0.4
268
Normal
-0.4
447
Tumor
-0.4
262
Normal
-0.4
283
Tumor
-0.5
478
Normal
-0.5
146
Normal
-0.5
728
Normal
-0.5
523
Tumor
-0.5
695
Tumor
-0.5
212
Normal
-0.5
462
Normal
-0.5
327
Tumor
-0.5
474
Normal
-0.5
918
Normal
-0.5
535
Tumor
-0.5
926
Normal
-0.5
375
Tumor
-0.5
472
Normal
-0.5
211
Tumor
-0.6
272
Normal
-0.6
468
Normal
-0.6
924
Normal
-0.6
917
Tumor
-0.6
487
Tumor
-0.6
227
Tumor
-0.7
456
Normal
-0.7
744
Normal
-0.7
343
Tumor
-0.7
355
Tumor
-0.8
743
Tumor
-0.8
914
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
