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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF2S3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
220.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
164.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
151.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
151.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
146.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
135.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
130.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
129.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
125.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
125.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
118.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
118.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
113.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
112.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
108.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
108.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
101.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
99.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
98.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
98.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
93.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
93.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
92.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
89.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
89.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
89.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
88.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
88.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
88.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
87.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
86.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
86.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
86.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
85.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
85.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
85.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
84.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
84.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
83.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
83.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
83.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
82.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
81.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
81.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
81.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
79.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
78.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
76.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
74.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
74.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
74.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
73.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
73.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
72.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
72.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
72.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
70.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
70.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
70.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
68.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
68.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
67.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
67.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
67.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
67.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
66.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
64.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
60.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
60.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
60.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
59.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
59.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
59.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
58.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
58.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
58.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
57.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
56.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
56.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
56.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
56.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
56.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
55.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
55.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
55.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
55.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
54.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
54.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
52.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
52.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
50.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
50.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
49.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
49.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
48.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
48.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
47.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
45.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
40.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
40.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
38.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
35.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
34.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
25.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF2S3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.1
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
219.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
147.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
128.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
110.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
108.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
108.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
98.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
97.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
97.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
94.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
92.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
92.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
89.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
89.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
88.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
87.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
87.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
87.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
86.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
85.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
82.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
81.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
81.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
80.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
79.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
79.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
77.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
76.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
76.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
74.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
74.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
73.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
73.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
72.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
71.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
71.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
71.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
70.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
69.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
68.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
67.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
67.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
66.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
65.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
64.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
64.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
63.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
63.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
62.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
60.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
60.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
59.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
58.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
57.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
57.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
57.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
57.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
56.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
55.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
55.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
55.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
54.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
54.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
52.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
52.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
51.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
51.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
50.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
48.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
46.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
45.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
45.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
38.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
35.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
0.7
557
Tumor
0.7
745
Tumor
0.7
1027
Tumor
0.7
313
Tumor
0.7
411
Tumor
0.6
815
Tumor
0.5
523
Tumor
0.5
697
Tumor
0.5
967
Tumor
0.4
257
Tumor
0.4
957
Tumor
0.4
135
Tumor
0.4
527
Tumor
0.4
497
Tumor
0.4
851
Tumor
0.4
131
Tumor
0.4
125
Tumor
0.4
537
Tumor
0.4
385
Tumor
0.4
211
Tumor
0.4
227
Tumor
0.4
467
Tumor
0.3
743
Tumor
0.3
471
Tumor
0.3
375
Tumor
0.3
285
Tumor
0.3
223
Tumor
0.3
493
Tumor
0.3
535
Tumor
0.3
137
Tumor
0.3
661
Tumor
0.3
1021
Tumor
0.3
1015
Tumor
0.3
951
Tumor
0.3
685
Tumor
0.3
727
Tumor
0.3
635
Tumor
0.3
617
Tumor
0.3
713
Tumor
0.3
283
Tumor
0.2
1013
Tumor
0.2
817
Tumor
0.2
955
Tumor
0.2
351
Tumor
0.2
145
Tumor
0.2
663
Tumor
0.2
191
Tumor
0.2
277
Tumor
0.2
525
Tumor
0.2
937
Tumor
0.2
647
Tumor
0.2
455
Tumor
0.2
445
Tumor
0.2
327
Tumor
0.2
217
Tumor
0.2
567
Tumor
0.2
213
Tumor
0.2
431
Tumor
0.2
953
Tumor
0.2
221
Tumor
0.2
573
Tumor
0.2
261
Tumor
0.2
777
Tumor
0.2
357
Tumor
0.2
477
Tumor
0.2
443
Tumor
0.2
925
Tumor
0.2
353
Tumor
0.2
112
Tumor
0.2
427
Tumor
0.2
873
Tumor
0.2
413
Tumor
0.2
387
Tumor
0.2
724
Normal
0.2
463
Tumor
0.1
515
Tumor
0.1
883
Tumor
0.1
943
Tumor
0.1
267
Tumor
0.1
563
Tumor
0.1
195
Tumor
0.1
975
Tumor
0.1
363
Tumor
0.1
141
Tumor
0.1
395
Tumor
0.1
147
Tumor
0.1
187
Tumor
0.1
435
Tumor
0.1
1043
Tumor
0.1
491
Tumor
0.1
1045
Tumor
0.1
571
Tumor
0.1
755
Tumor
0.1
966
Normal
0.1
533
Tumor
0.1
923
Tumor
0.1
311
Tumor
0.1
913
Tumor
0.1
367
Tumor
0.1
421
Tumor
0.1
983
Tumor
0.1
715
Tumor
0.1
641
Tumor
0.1
737
Tumor
0.1
695
Tumor
0.1
128
Normal
0.1
823
Tumor
0.1
271
Tumor
0.1
1041
Tumor
0.1
977
Tumor
0.1
473
Tumor
0.1
963
Tumor
0.1
965
Tumor
0.0
331
Tumor
0.0
918
Normal
0.0
917
Tumor
0.0
383
Tumor
0.0
447
Tumor
0.0
481
Tumor
0.0
127
Tumor
0.0
857
Tumor
0.0
628
Normal
0.0
1028
Normal
0.0
627
Tumor
0.0
863
Tumor
0.0
922
Normal
0.0
665
Tumor
0.0
615
Tumor
0.0
978
Normal
0.0
864
Normal
0.0
451
Tumor
0.0
228
Normal
0.0
1026
Normal
0.0
861
Tumor
0.0
425
Tumor
0.0
956
Normal
0.0
924
Normal
0.0
553
Tumor
0.0
944
Normal
0.0
616
Normal
0.0
636
Normal
0.0
877
Tumor
0.0
142
Normal
0.0
881
Tumor
0.0
517
Tumor
0.0
721
Tumor
0.0
124
Normal
0.0
433
Tumor
0.0
286
Normal
0.0
474
Normal
0.0
297
Tumor
0.0
1022
Normal
0.0
113
Tumor
0.0
314
Normal
0.0
981
Tumor
0.0
111
Normal
0.0
982
Normal
0.0
952
Normal
0.0
728
Normal
0.0
461
Tumor
0.0
214
Normal
-0.1
212
Normal
-0.1
355
Tumor
-0.1
866
Normal
-0.1
926
Normal
-0.1
185
Tumor
-0.1
284
Normal
-0.1
188
Normal
-0.1
964
Normal
-0.1
361
Tumor
-0.1
448
Normal
-0.1
538
Normal
-0.1
412
Normal
-0.1
492
Normal
-0.1
272
Normal
-0.1
365
Tumor
-0.1
114
Normal
-0.1
976
Normal
-0.1
224
Normal
-0.1
868
Normal
-0.1
422
Normal
-0.1
884
Normal
-0.1
524
Normal
-0.1
1044
Normal
-0.1
232
Normal
-0.1
434
Normal
-0.1
488
Normal
-0.1
1031
Tumor
-0.1
536
Normal
-0.1
343
Tumor
-0.1
258
Normal
-0.1
862
Normal
-0.1
554
Normal
-0.1
738
Normal
-0.1
714
Normal
-0.1
466
Normal
-0.1
494
Normal
-0.1
465
Tumor
-0.1
262
Normal
-0.1
483
Tumor
-0.1
723
Tumor
-0.1
1046
Normal
-0.1
558
Normal
-0.1
484
Normal
-0.1
218
Normal
-0.1
741
Tumor
-0.1
136
Normal
-0.1
742
Normal
-0.1
426
Normal
-0.1
414
Normal
-0.1
171
Tumor
-0.1
518
Normal
-0.1
376
Normal
-0.1
545
Tumor
-0.1
526
Normal
-0.1
424
Normal
-0.1
528
Normal
-0.1
968
Normal
-0.1
436
Normal
-0.1
1016
Normal
-0.1
362
Normal
-0.1
138
Normal
-0.1
816
Normal
-0.1
1025
Tumor
-0.1
852
Normal
-0.1
332
Normal
-0.1
746
Normal
-0.1
416
Normal
-0.1
352
Normal
-0.1
568
Normal
-0.1
126
Normal
-0.1
393
Tumor
-0.1
914
Normal
-0.1
298
Normal
-0.1
778
Normal
-0.1
278
Normal
-0.1
312
Normal
-0.1
696
Normal
-0.1
858
Normal
-0.1
423
Tumor
-0.1
146
Normal
-0.1
358
Normal
-0.1
572
Normal
-0.1
1014
Normal
-0.1
452
Normal
-0.1
686
Normal
-0.1
356
Normal
-0.1
813
Tumor
-0.1
446
Normal
-0.1
196
Normal
-0.1
368
Normal
-0.1
516
Normal
-0.1
698
Normal
-0.1
984
Normal
-0.1
428
Normal
-0.1
172
Normal
-0.1
785
Tumor
-0.1
911
Tumor
-0.1
916
Normal
-0.2
671
Tumor
-0.2
162
Normal
-0.2
534
Normal
-0.2
824
Normal
-0.2
268
Normal
-0.2
878
Normal
-0.2
546
Normal
-0.2
432
Normal
-0.2
231
Tumor
-0.2
1042
Normal
-0.2
814
Normal
-0.2
192
Normal
-0.2
132
Normal
-0.2
954
Normal
-0.2
938
Normal
-0.2
722
Normal
-0.2
1032
Normal
-0.2
618
Normal
-0.2
478
Normal
-0.2
222
Normal
-0.2
328
Normal
-0.2
818
Normal
-0.2
912
Normal
-0.2
564
Normal
-0.2
384
Normal
-0.2
468
Normal
-0.2
874
Normal
-0.2
882
Normal
-0.2
186
Normal
-0.2
462
Normal
-0.2
344
Normal
-0.2
915
Tumor
-0.2
642
Normal
-0.2
366
Normal
-0.2
648
Normal
-0.2
364
Normal
-0.2
958
Normal
-0.2
513
Tumor
-0.2
482
Normal
-0.2
662
Normal
-0.2
921
Tumor
-0.2
786
Normal
-0.2
415
Tumor
-0.2
472
Normal
-0.2
148
Normal
-0.2
456
Normal
-0.2
514
Normal
-0.2
498
Normal
-0.3
391
Tumor
-0.3
354
Normal
-0.3
716
Normal
-0.3
342
Normal
-0.3
664
Normal
-0.3
867
Tumor
-0.3
756
Normal
-0.3
386
Normal
-0.3
574
Normal
-0.3
392
Normal
-0.3
341
Tumor
-0.3
744
Normal
-0.3
666
Normal
-0.3
444
Normal
-0.3
672
Normal
-0.3
464
Normal
-0.3
487
Tumor
-0.3
161
Tumor
-0.3
396
Normal
-0.4
123
Tumor
-0.5
394
Normal
-0.5
388
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
