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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
METTL26 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
296.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
178.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
148.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
144.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
141.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
137.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
135.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
115.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
111.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
108.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
105.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
105.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
102.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
102.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
101.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
100.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
98.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
96.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
95.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
93.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
92.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
92.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
90.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
90.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
86.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
86.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
86.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
85.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
83.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
81.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
81.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
81.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
81.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
80.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
80.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
79.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
78.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
76.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
75.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
74.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
73.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
73.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
72.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
72.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
70.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
69.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
68.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
68.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
68.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
68.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
66.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
65.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
65.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
65.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
65.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
65.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
65.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
64.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
64.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
63.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
63.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
63.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
63.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
62.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
62.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
62.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
61.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
61.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
60.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
60.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
59.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
59.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
54.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
53.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
52.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
51.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
51.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
50.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
50.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
49.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
49.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
47.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
45.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
45.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
44.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
44.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
44.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
44.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
43.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
41.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
41.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
40.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
40.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
0.8
484
Normal
0.7
635
Tumor
0.7
342
Normal
0.7
698
Normal
0.7
938
Normal
0.6
1022
Normal
0.6
464
Normal
0.6
862
Normal
0.6
448
Normal
0.5
298
Normal
0.5
955
Tumor
0.5
642
Normal
0.5
1032
Normal
0.5
944
Normal
0.5
746
Normal
0.5
714
Normal
0.5
393
Tumor
0.5
332
Normal
0.5
132
Normal
0.5
867
Tumor
0.5
148
Normal
0.5
1026
Normal
0.5
172
Normal
0.4
456
Normal
0.4
222
Normal
0.4
465
Tumor
0.4
452
Normal
0.4
186
Normal
0.4
196
Normal
0.4
618
Normal
0.4
818
Normal
0.4
394
Normal
0.4
231
Tumor
0.4
956
Normal
0.4
952
Normal
0.4
716
Normal
0.4
616
Normal
0.4
278
Normal
0.4
858
Normal
0.4
911
Tumor
0.4
554
Normal
0.4
494
Normal
0.4
162
Normal
0.4
664
Normal
0.4
488
Normal
0.4
1046
Normal
0.4
142
Normal
0.4
314
Normal
0.4
878
Normal
0.4
958
Normal
0.4
513
Tumor
0.4
1014
Normal
0.4
722
Normal
0.4
352
Normal
0.4
926
Normal
0.4
723
Tumor
0.4
954
Normal
0.4
481
Tumor
0.4
466
Normal
0.4
882
Normal
0.4
964
Normal
0.4
568
Normal
0.4
1044
Normal
0.4
738
Normal
0.4
546
Normal
0.4
534
Normal
0.4
744
Normal
0.3
312
Normal
0.3
436
Normal
0.3
924
Normal
0.3
572
Normal
0.3
214
Normal
0.3
1042
Normal
0.3
482
Normal
0.3
742
Normal
0.3
136
Normal
0.3
636
Normal
0.3
696
Normal
0.3
912
Normal
0.3
472
Normal
0.3
824
Normal
0.3
426
Normal
0.3
412
Normal
0.3
473
Tumor
0.3
218
Normal
0.3
922
Normal
0.3
981
Tumor
0.3
232
Normal
0.3
672
Normal
0.3
365
Tumor
0.3
666
Normal
0.3
873
Tumor
0.3
388
Normal
0.3
146
Normal
0.3
344
Normal
0.3
874
Normal
0.3
462
Normal
0.3
446
Normal
0.3
376
Normal
0.3
272
Normal
0.3
984
Normal
0.3
558
Normal
0.3
686
Normal
0.3
528
Normal
0.3
648
Normal
0.3
756
Normal
0.3
128
Normal
0.3
424
Normal
0.3
228
Normal
0.3
866
Normal
0.3
536
Normal
0.3
386
Normal
0.3
358
Normal
0.3
431
Tumor
0.3
416
Normal
0.3
1028
Normal
0.3
392
Normal
0.3
864
Normal
0.2
114
Normal
0.2
432
Normal
0.2
492
Normal
0.2
628
Normal
0.2
468
Normal
0.2
498
Normal
0.2
396
Normal
0.2
414
Normal
0.2
977
Tumor
0.2
564
Normal
0.2
328
Normal
0.2
192
Normal
0.2
915
Tumor
0.2
354
Normal
0.2
914
Normal
0.2
662
Normal
0.2
356
Normal
0.2
368
Normal
0.2
364
Normal
0.2
884
Normal
0.2
852
Normal
0.2
516
Normal
0.2
514
Normal
0.2
415
Tumor
0.2
715
Tumor
0.2
563
Tumor
0.2
422
Normal
0.2
111
Normal
0.2
258
Normal
0.2
816
Normal
0.2
138
Normal
0.2
538
Normal
0.2
515
Tumor
0.1
362
Normal
0.1
1025
Tumor
0.1
982
Normal
0.1
976
Normal
0.1
728
Normal
0.1
411
Tumor
0.1
918
Normal
0.1
474
Normal
0.1
574
Normal
0.1
778
Normal
0.1
195
Tumor
0.1
966
Normal
0.1
366
Normal
0.1
221
Tumor
0.1
327
Tumor
0.1
212
Normal
0.1
518
Normal
0.1
124
Normal
0.1
978
Normal
0.1
262
Normal
0.1
341
Tumor
0.1
478
Normal
0.1
526
Normal
0.1
384
Normal
0.1
1016
Normal
0.1
112
Tumor
0.1
357
Tumor
0.1
428
Normal
0.1
786
Normal
0.1
286
Normal
0.1
868
Normal
0.1
755
Tumor
0.1
433
Tumor
0.1
145
Tumor
0.1
493
Tumor
0.1
524
Normal
0.1
224
Normal
0.0
1041
Tumor
0.0
571
Tumor
0.0
434
Normal
0.0
857
Tumor
0.0
553
Tumor
0.0
615
Tumor
0.0
188
Normal
0.0
533
Tumor
0.0
861
Tumor
0.0
647
Tumor
0.0
277
Tumor
0.0
641
Tumor
0.0
361
Tumor
0.0
877
Tumor
0.0
968
Normal
0.0
1043
Tumor
0.0
268
Normal
0.0
451
Tumor
0.0
916
Normal
0.0
697
Tumor
0.0
147
Tumor
0.0
284
Normal
0.0
355
Tumor
0.0
943
Tumor
0.0
113
Tumor
0.0
297
Tumor
0.0
171
Tumor
0.0
444
Normal
0.0
665
Tumor
0.0
223
Tumor
-0.1
721
Tumor
-0.1
785
Tumor
-0.1
917
Tumor
-0.1
617
Tumor
-0.1
777
Tumor
-0.1
627
Tumor
-0.1
126
Normal
-0.1
937
Tumor
-0.1
573
Tumor
-0.1
127
Tumor
-0.1
423
Tumor
-0.1
187
Tumor
-0.1
395
Tumor
-0.1
261
Tumor
-0.1
557
Tumor
-0.1
497
Tumor
-0.1
1031
Tumor
-0.1
921
Tumor
-0.1
267
Tumor
-0.1
447
Tumor
-0.1
1015
Tumor
-0.1
353
Tumor
-0.1
913
Tumor
-0.1
487
Tumor
-0.1
1013
Tumor
-0.1
271
Tumor
-0.1
814
Normal
-0.2
881
Tumor
-0.2
813
Tumor
-0.2
455
Tumor
-0.2
523
Tumor
-0.2
141
Tumor
-0.2
461
Tumor
-0.2
967
Tumor
-0.2
191
Tumor
-0.2
953
Tumor
-0.2
823
Tumor
-0.2
311
Tumor
-0.2
227
Tumor
-0.2
137
Tumor
-0.2
445
Tumor
-0.2
363
Tumor
-0.2
963
Tumor
-0.2
517
Tumor
-0.2
443
Tumor
-0.3
463
Tumor
-0.3
213
Tumor
-0.3
217
Tumor
-0.3
413
Tumor
-0.3
925
Tumor
-0.3
211
Tumor
-0.3
467
Tumor
-0.3
257
Tumor
-0.3
1045
Tumor
-0.3
351
Tumor
-0.3
957
Tumor
-0.3
427
Tumor
-0.3
817
Tumor
-0.3
975
Tumor
-0.3
741
Tumor
-0.3
545
Tumor
-0.3
135
Tumor
-0.3
745
Tumor
-0.3
285
Tumor
-0.3
491
Tumor
-0.3
883
Tumor
-0.3
535
Tumor
-0.3
865
Tumor
-0.4
383
Tumor
-0.4
185
Tumor
-0.4
161
Tumor
-0.4
471
Tumor
-0.4
527
Tumor
-0.4
727
Tumor
-0.4
313
Tumor
-0.4
724
Normal
-0.4
525
Tumor
-0.4
851
Tumor
-0.4
483
Tumor
-0.4
663
Tumor
-0.4
131
Tumor
-0.5
713
Tumor
-0.5
123
Tumor
-0.5
923
Tumor
-0.5
1027
Tumor
-0.5
815
Tumor
-0.5
863
Tumor
-0.5
685
Tumor
-0.5
421
Tumor
-0.5
435
Tumor
-0.6
385
Tumor
-0.6
343
Tumor
-0.6
387
Tumor
-0.7
391
Tumor
-0.7
477
Tumor
-0.7
367
Tumor
-0.7
983
Tumor
-0.7
951
Tumor
-0.7
283
Tumor
-0.7
125
Tumor
-0.7
1021
Tumor
-0.7
737
Tumor
-0.8
965
Tumor
-0.8
671
Tumor
-0.8
567
Tumor
-0.8
331
Tumor
-0.8
425
Tumor
-0.9
743
Tumor
-1.0
661
Tumor
-1.0
375
Tumor
-1.0
537
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
