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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EXOSC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.0
113
Tumor
0.6
467
Tumor
0.6
965
Tumor
0.5
661
Tumor
0.5
351
Tumor
0.5
951
Tumor
0.5
395
Tumor
0.5
967
Tumor
0.5
367
Tumor
0.4
331
Tumor
0.4
427
Tumor
0.4
285
Tumor
0.4
391
Tumor
0.4
187
Tumor
0.4
724
Normal
0.4
387
Tumor
0.4
141
Tumor
0.4
217
Tumor
0.4
423
Tumor
0.3
327
Tumor
0.3
161
Tumor
0.3
451
Tumor
0.3
277
Tumor
0.3
227
Tumor
0.3
665
Tumor
0.3
388
Normal
0.3
883
Tumor
0.3
145
Tumor
0.3
533
Tumor
0.3
267
Tumor
0.3
112
Tumor
0.3
272
Normal
0.3
191
Tumor
0.3
123
Tumor
0.3
271
Tumor
0.3
663
Tumor
0.3
557
Tumor
0.3
138
Normal
0.2
685
Tumor
0.2
465
Tumor
0.2
433
Tumor
0.2
913
Tumor
0.2
571
Tumor
0.2
136
Normal
0.2
671
Tumor
0.2
258
Normal
0.2
815
Tumor
0.2
1041
Tumor
0.2
394
Normal
0.2
444
Normal
0.2
1031
Tumor
0.2
148
Normal
0.2
313
Tumor
0.2
523
Tumor
0.2
396
Normal
0.2
755
Tumor
0.2
146
Normal
0.2
188
Normal
0.2
466
Normal
0.2
185
Tumor
0.2
648
Normal
0.2
881
Tumor
0.2
221
Tumor
0.1
261
Tumor
0.1
361
Tumor
0.1
435
Tumor
0.1
213
Tumor
0.1
446
Normal
0.1
353
Tumor
0.1
298
Normal
0.1
132
Normal
0.1
456
Normal
0.1
514
Normal
0.1
222
Normal
0.1
743
Tumor
0.1
386
Normal
0.1
647
Tumor
0.1
111
Normal
0.1
715
Tumor
0.1
925
Tumor
0.1
983
Tumor
0.1
937
Tumor
0.1
411
Tumor
0.1
535
Tumor
0.1
162
Normal
0.1
955
Tumor
0.1
356
Normal
0.1
434
Normal
0.1
268
Normal
0.1
383
Tumor
0.1
877
Tumor
0.1
262
Normal
0.1
513
Tumor
0.1
1021
Tumor
0.1
232
Normal
0.1
224
Normal
0.1
452
Normal
0.1
436
Normal
0.1
172
Normal
0.1
432
Normal
0.1
414
Normal
0.1
722
Normal
0.1
186
Normal
0.1
363
Tumor
0.1
865
Tumor
0.1
912
Normal
0.1
422
Normal
0.1
981
Tumor
0.1
858
Normal
0.1
214
Normal
0.1
468
Normal
0.1
385
Tumor
0.1
431
Tumor
0.1
283
Tumor
0.1
376
Normal
0.1
741
Tumor
0.1
428
Normal
0.1
284
Normal
0.1
777
Tumor
0.1
923
Tumor
0.1
196
Normal
0.1
364
Normal
0.0
286
Normal
0.0
568
Normal
0.0
278
Normal
0.0
142
Normal
0.0
564
Normal
0.0
341
Tumor
0.0
526
Normal
0.0
127
Tumor
0.0
124
Normal
0.0
354
Normal
0.0
328
Normal
0.0
616
Normal
0.0
938
Normal
0.0
817
Tumor
0.0
518
Normal
0.0
528
Normal
0.0
1016
Normal
0.0
867
Tumor
0.0
314
Normal
0.0
558
Normal
0.0
1014
Normal
0.0
424
Normal
0.0
368
Normal
0.0
814
Normal
0.0
416
Normal
0.0
982
Normal
0.0
352
Normal
0.0
1013
Tumor
0.0
195
Tumor
0.0
426
Normal
0.0
851
Tumor
0.0
412
Normal
0.0
358
Normal
0.0
878
Normal
0.0
824
Normal
0.0
464
Normal
0.0
297
Tumor
0.0
392
Normal
0.0
192
Normal
0.0
563
Tumor
0.0
171
Tumor
0.0
343
Tumor
0.0
744
Normal
0.0
445
Tumor
0.0
517
Tumor
0.0
462
Normal
0.0
756
Normal
0.0
954
Normal
0.0
636
Normal
0.0
978
Normal
0.0
813
Tumor
0.0
477
Tumor
0.0
778
Normal
0.0
212
Normal
0.0
516
Normal
0.0
884
Normal
0.0
1015
Tumor
0.0
126
Normal
0.0
914
Normal
0.0
365
Tumor
0.0
537
Tumor
0.0
211
Tumor
0.0
524
Normal
0.0
472
Normal
0.0
421
Tumor
0.0
714
Normal
0.0
882
Normal
0.0
128
Normal
0.0
482
Normal
0.0
218
Normal
0.0
818
Normal
0.0
911
Tumor
0.0
618
Normal
0.0
627
Tumor
0.0
534
Normal
0.0
455
Tumor
0.0
231
Tumor
0.0
567
Tumor
-0.1
944
Normal
-0.1
1022
Normal
-0.1
357
Tumor
-0.1
137
Tumor
-0.1
497
Tumor
-0.1
746
Normal
-0.1
362
Normal
-0.1
1026
Normal
-0.1
1032
Normal
-0.1
463
Tumor
-0.1
515
Tumor
-0.1
984
Normal
-0.1
964
Normal
-0.1
956
Normal
-0.1
664
Normal
-0.1
742
Normal
-0.1
228
Normal
-0.1
1042
Normal
-0.1
447
Tumor
-0.1
574
Normal
-0.1
527
Tumor
-0.1
312
Normal
-0.1
425
Tumor
-0.1
554
Normal
-0.1
957
Tumor
-0.1
1046
Normal
-0.1
662
Normal
-0.1
868
Normal
-0.1
443
Tumor
-0.1
332
Normal
-0.1
366
Normal
-0.1
862
Normal
-0.1
384
Normal
-0.1
696
Normal
-0.1
866
Normal
-0.1
615
Tumor
-0.1
628
Normal
-0.1
488
Normal
-0.1
1027
Tumor
-0.1
873
Tumor
-0.1
484
Normal
-0.1
721
Tumor
-0.1
698
Normal
-0.1
738
Normal
-0.1
498
Normal
-0.1
342
Normal
-0.1
1028
Normal
-0.1
786
Normal
-0.1
525
Tumor
-0.1
572
Normal
-0.1
672
Normal
-0.1
966
Normal
-0.1
857
Tumor
-0.1
861
Tumor
-0.1
538
Normal
-0.1
536
Normal
-0.1
573
Tumor
-0.1
147
Tumor
-0.1
952
Normal
-0.1
487
Tumor
-0.1
344
Normal
-0.1
415
Tumor
-0.1
728
Normal
-0.1
617
Tumor
-0.1
546
Normal
-0.1
1045
Tumor
-0.1
135
Tumor
-0.1
852
Normal
-0.1
874
Normal
-0.2
723
Tumor
-0.2
716
Normal
-0.2
393
Tumor
-0.2
953
Tumor
-0.2
963
Tumor
-0.2
223
Tumor
-0.2
494
Normal
-0.2
131
Tumor
-0.2
958
Normal
-0.2
921
Tumor
-0.2
473
Tumor
-0.2
461
Tumor
-0.2
114
Normal
-0.2
863
Tumor
-0.2
483
Tumor
-0.2
545
Tumor
-0.2
355
Tumor
-0.2
1025
Tumor
-0.2
642
Normal
-0.2
686
Normal
-0.2
816
Normal
-0.2
727
Tumor
-0.2
695
Tumor
-0.2
713
Tumor
-0.2
471
Tumor
-0.2
478
Normal
-0.2
864
Normal
-0.2
493
Tumor
-0.2
976
Normal
-0.2
125
Tumor
-0.2
666
Normal
-0.2
448
Normal
-0.2
917
Tumor
-0.2
968
Normal
-0.2
915
Tumor
-0.3
922
Normal
-0.3
635
Tumor
-0.3
943
Tumor
-0.3
474
Normal
-0.3
641
Tumor
-0.3
481
Tumor
-0.3
823
Tumor
-0.3
1044
Normal
-0.3
311
Tumor
-0.3
926
Normal
-0.3
916
Normal
-0.3
697
Tumor
-0.3
977
Tumor
-0.3
737
Tumor
-0.3
375
Tumor
-0.3
257
Tumor
-0.4
492
Normal
-0.4
918
Normal
-0.4
924
Normal
-0.4
745
Tumor
-0.4
553
Tumor
-0.4
785
Tumor
-0.4
491
Tumor
-0.5
975
Tumor
-0.6
1043
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
