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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBPL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBPL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
385
Tumor
0.8
545
Tumor
0.7
171
Tumor
0.7
435
Tumor
0.6
695
Tumor
0.6
553
Tumor
0.5
135
Tumor
0.5
112
Tumor
0.5
357
Tumor
0.5
921
Tumor
0.4
883
Tumor
0.4
421
Tumor
0.4
615
Tumor
0.4
445
Tumor
0.4
411
Tumor
0.4
257
Tumor
0.4
145
Tumor
0.4
873
Tumor
0.4
1045
Tumor
0.4
617
Tumor
0.4
113
Tumor
0.4
331
Tumor
0.4
271
Tumor
0.4
937
Tumor
0.3
465
Tumor
0.3
261
Tumor
0.3
713
Tumor
0.3
815
Tumor
0.3
963
Tumor
0.3
925
Tumor
0.3
527
Tumor
0.3
354
Normal
0.3
641
Tumor
0.3
571
Tumor
0.3
358
Normal
0.3
471
Tumor
0.3
957
Tumor
0.3
127
Tumor
0.3
877
Tumor
0.3
427
Tumor
0.3
423
Tumor
0.3
685
Tumor
0.3
1015
Tumor
0.3
857
Tumor
0.3
663
Tumor
0.3
277
Tumor
0.3
671
Tumor
0.3
342
Normal
0.3
777
Tumor
0.3
785
Tumor
0.2
851
Tumor
0.2
567
Tumor
0.2
223
Tumor
0.2
297
Tumor
0.2
125
Tumor
0.2
483
Tumor
0.2
627
Tumor
0.2
128
Normal
0.2
147
Tumor
0.2
114
Normal
0.2
817
Tumor
0.2
537
Tumor
0.2
196
Normal
0.2
981
Tumor
0.2
513
Tumor
0.2
341
Tumor
0.2
191
Tumor
0.2
455
Tumor
0.2
363
Tumor
0.2
446
Normal
0.2
422
Normal
0.2
351
Tumor
0.2
227
Tumor
0.2
1027
Tumor
0.1
983
Tumor
0.1
217
Tumor
0.1
913
Tumor
0.1
456
Normal
0.1
367
Tumor
0.1
426
Normal
0.1
211
Tumor
0.1
647
Tumor
0.1
477
Tumor
0.1
425
Tumor
0.1
284
Normal
0.1
221
Tumor
0.1
858
Normal
0.1
111
Normal
0.1
464
Normal
0.1
344
Normal
0.1
431
Tumor
0.1
533
Tumor
0.1
497
Tumor
0.1
911
Tumor
0.1
443
Tumor
0.1
743
Tumor
0.1
964
Normal
0.1
923
Tumor
0.1
222
Normal
0.1
1041
Tumor
0.1
332
Normal
0.1
867
Tumor
0.1
185
Tumor
0.1
968
Normal
0.1
467
Tumor
0.1
863
Tumor
0.1
451
Tumor
0.1
278
Normal
0.1
433
Tumor
0.1
967
Tumor
0.1
313
Tumor
0.1
917
Tumor
0.1
126
Normal
0.1
283
Tumor
0.1
428
Normal
0.1
868
Normal
0.1
352
Normal
0.1
528
Normal
0.1
727
Tumor
0.1
214
Normal
0.1
267
Tumor
0.1
286
Normal
0.1
546
Normal
0.1
824
Normal
0.1
424
Normal
0.1
745
Tumor
0.1
865
Tumor
0.1
953
Tumor
0.1
466
Normal
0.1
365
Tumor
0.0
212
Normal
0.0
642
Normal
0.0
353
Tumor
0.0
298
Normal
0.0
161
Tumor
0.0
231
Tumor
0.0
534
Normal
0.0
468
Normal
0.0
148
Normal
0.0
356
Normal
0.0
1031
Tumor
0.0
186
Normal
0.0
573
Tumor
0.0
515
Tumor
0.0
965
Tumor
0.0
436
Normal
0.0
481
Tumor
0.0
818
Normal
0.0
375
Tumor
0.0
388
Normal
0.0
224
Normal
0.0
724
Normal
0.0
172
Normal
0.0
312
Normal
0.0
452
Normal
0.0
1021
Tumor
0.0
463
Tumor
0.0
874
Normal
0.0
187
Tumor
0.0
914
Normal
0.0
823
Tumor
0.0
124
Normal
0.0
1046
Normal
0.0
977
Tumor
0.0
414
Normal
0.0
1044
Normal
0.0
162
Normal
0.0
882
Normal
0.0
976
Normal
0.0
188
Normal
0.0
1022
Normal
0.0
568
Normal
0.0
722
Normal
0.0
648
Normal
0.0
741
Tumor
0.0
192
Normal
0.0
395
Tumor
0.0
864
Normal
0.0
618
Normal
0.0
951
Tumor
0.0
966
Normal
0.0
538
Normal
0.0
415
Tumor
0.0
697
Tumor
0.0
314
Normal
0.0
432
Normal
0.0
564
Normal
0.0
912
Normal
0.0
535
Tumor
0.0
1013
Tumor
0.0
518
Normal
0.0
514
Normal
0.0
343
Tumor
0.0
952
Normal
0.0
361
Tumor
0.0
716
Normal
0.0
866
Normal
0.0
434
Normal
0.0
525
Tumor
0.0
628
Normal
0.0
328
Normal
0.0
391
Tumor
0.0
383
Tumor
0.0
554
Normal
0.0
132
Normal
0.0
1016
Normal
0.0
721
Tumor
0.0
698
Normal
0.0
228
Normal
0.0
755
Tumor
0.0
884
Normal
0.0
696
Normal
0.0
746
Normal
0.0
574
Normal
0.0
444
Normal
-0.1
1014
Normal
-0.1
517
Tumor
-0.1
368
Normal
-0.1
1025
Tumor
-0.1
138
Normal
-0.1
195
Tumor
-0.1
1042
Normal
-0.1
881
Tumor
-0.1
982
Normal
-0.1
394
Normal
-0.1
862
Normal
-0.1
491
Tumor
-0.1
487
Tumor
-0.1
142
Normal
-0.1
861
Tumor
-0.1
355
Tumor
-0.1
715
Tumor
-0.1
738
Normal
-0.1
958
Normal
-0.1
146
Normal
-0.1
616
Normal
-0.1
635
Tumor
-0.1
311
Tumor
-0.1
364
Normal
-0.1
813
Tumor
-0.1
664
Normal
-0.1
978
Normal
-0.1
955
Tumor
-0.1
852
Normal
-0.1
1043
Tumor
-0.1
666
Normal
-0.1
376
Normal
-0.1
131
Tumor
-0.1
557
Tumor
-0.1
1032
Normal
-0.1
878
Normal
-0.1
396
Normal
-0.1
975
Tumor
-0.1
416
Normal
-0.1
218
Normal
-0.1
1026
Normal
-0.1
714
Normal
-0.1
918
Normal
-0.1
262
Normal
-0.1
916
Normal
-0.1
756
Normal
-0.1
137
Tumor
-0.1
412
Normal
-0.1
493
Tumor
-0.1
915
Tumor
-0.1
563
Tumor
-0.1
488
Normal
-0.1
814
Normal
-0.1
448
Normal
-0.1
498
Normal
-0.1
136
Normal
-0.1
816
Normal
-0.1
272
Normal
-0.1
285
Tumor
-0.1
484
Normal
-0.1
213
Tumor
-0.1
232
Normal
-0.1
672
Normal
-0.1
742
Normal
-0.1
926
Normal
-0.1
636
Normal
-0.1
362
Normal
-0.2
572
Normal
-0.2
943
Tumor
-0.2
686
Normal
-0.2
258
Normal
-0.2
268
Normal
-0.2
786
Normal
-0.2
393
Tumor
-0.2
384
Normal
-0.2
662
Normal
-0.2
478
Normal
-0.2
924
Normal
-0.2
327
Tumor
-0.2
462
Normal
-0.2
558
Normal
-0.2
1028
Normal
-0.2
386
Normal
-0.2
956
Normal
-0.2
744
Normal
-0.2
778
Normal
-0.2
516
Normal
-0.2
526
Normal
-0.2
461
Tumor
-0.2
922
Normal
-0.2
387
Tumor
-0.2
661
Tumor
-0.2
492
Normal
-0.2
447
Tumor
-0.2
494
Normal
-0.2
984
Normal
-0.2
141
Tumor
-0.2
482
Normal
-0.2
944
Normal
-0.2
366
Normal
-0.2
938
Normal
-0.3
392
Normal
-0.3
474
Normal
-0.3
954
Normal
-0.3
472
Normal
-0.3
536
Normal
-0.3
728
Normal
-0.3
123
Tumor
-0.3
413
Tumor
-0.3
723
Tumor
-0.3
737
Tumor
-0.3
665
Tumor
-0.4
524
Normal
-0.4
473
Tumor
-0.4
523
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
