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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBGCP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBGCP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
0.9
965
Tumor
0.9
277
Tumor
0.9
1013
Tumor
0.8
131
Tumor
0.8
411
Tumor
0.7
983
Tumor
0.7
445
Tumor
0.7
815
Tumor
0.7
743
Tumor
0.7
865
Tumor
0.6
951
Tumor
0.6
635
Tumor
0.6
271
Tumor
0.5
367
Tumor
0.5
313
Tumor
0.5
953
Tumor
0.5
877
Tumor
0.5
921
Tumor
0.5
553
Tumor
0.5
567
Tumor
0.4
435
Tumor
0.4
211
Tumor
0.4
355
Tumor
0.4
981
Tumor
0.4
357
Tumor
0.4
385
Tumor
0.4
523
Tumor
0.4
957
Tumor
0.4
671
Tumor
0.4
1021
Tumor
0.4
883
Tumor
0.4
125
Tumor
0.4
257
Tumor
0.4
661
Tumor
0.3
127
Tumor
0.3
1043
Tumor
0.3
1025
Tumor
0.3
473
Tumor
0.3
663
Tumor
0.3
467
Tumor
0.3
343
Tumor
0.3
923
Tumor
0.3
1031
Tumor
0.3
571
Tumor
0.3
463
Tumor
0.3
977
Tumor
0.3
695
Tumor
0.3
231
Tumor
0.3
331
Tumor
0.3
813
Tumor
0.3
141
Tumor
0.3
443
Tumor
0.3
525
Tumor
0.3
311
Tumor
0.3
431
Tumor
0.3
413
Tumor
0.3
483
Tumor
0.3
161
Tumor
0.2
1027
Tumor
0.2
545
Tumor
0.2
697
Tumor
0.2
537
Tumor
0.2
713
Tumor
0.2
363
Tumor
0.2
665
Tumor
0.2
135
Tumor
0.2
471
Tumor
0.2
123
Tumor
0.2
147
Tumor
0.2
455
Tumor
0.2
937
Tumor
0.2
491
Tumor
0.2
967
Tumor
0.2
375
Tumor
0.2
737
Tumor
0.2
227
Tumor
0.2
487
Tumor
0.2
425
Tumor
0.2
391
Tumor
0.2
925
Tumor
0.2
741
Tumor
0.2
112
Tumor
0.2
647
Tumor
0.1
814
Normal
0.1
213
Tumor
0.1
393
Tumor
0.1
755
Tumor
0.1
724
Normal
0.1
327
Tumor
0.1
297
Tumor
0.1
727
Tumor
0.1
444
Normal
0.1
314
Normal
0.1
535
Tumor
0.1
361
Tumor
0.1
267
Tumor
0.1
434
Normal
0.1
873
Tumor
0.1
128
Normal
0.1
466
Normal
0.1
943
Tumor
0.1
298
Normal
0.1
423
Tumor
0.1
124
Normal
0.1
312
Normal
0.1
468
Normal
0.1
818
Normal
0.1
433
Tumor
0.1
497
Tumor
0.1
824
Normal
0.1
415
Tumor
0.1
451
Tumor
0.1
858
Normal
0.1
278
Normal
0.1
262
Normal
0.1
332
Normal
0.1
851
Tumor
0.1
527
Tumor
0.0
978
Normal
0.0
721
Tumor
0.0
142
Normal
0.0
517
Tumor
0.0
113
Tumor
0.0
881
Tumor
0.0
185
Tumor
0.0
816
Normal
0.0
536
Normal
0.0
963
Tumor
0.0
1016
Normal
0.0
456
Normal
0.0
515
Tumor
0.0
285
Tumor
0.0
465
Tumor
0.0
573
Tumor
0.0
432
Normal
0.0
192
Normal
0.0
715
Tumor
0.0
126
Normal
0.0
533
Tumor
0.0
1014
Normal
0.0
685
Tumor
0.0
268
Normal
0.0
446
Normal
0.0
261
Tumor
0.0
867
Tumor
0.0
283
Tumor
0.0
785
Tumor
0.0
984
Normal
0.0
223
Tumor
0.0
944
Normal
0.0
162
Normal
0.0
384
Normal
0.0
636
Normal
0.0
917
Tumor
0.0
557
Tumor
0.0
823
Tumor
0.0
478
Normal
0.0
915
Tumor
0.0
328
Normal
0.0
217
Tumor
0.0
641
Tumor
0.0
447
Tumor
0.0
452
Normal
0.0
857
Tumor
-0.1
356
Normal
-0.1
344
Normal
-0.1
137
Tumor
-0.1
146
Normal
-0.1
493
Tumor
-0.1
396
Normal
-0.1
728
Normal
-0.1
114
Normal
-0.1
672
Normal
-0.1
224
Normal
-0.1
196
Normal
-0.1
172
Normal
-0.1
368
Normal
-0.1
618
Normal
-0.1
188
Normal
-0.1
481
Tumor
-0.1
138
Normal
-0.1
436
Normal
-0.1
866
Normal
-0.1
136
Normal
-0.1
615
Tumor
-0.1
461
Tumor
-0.1
272
Normal
-0.1
392
Normal
-0.1
513
Tumor
-0.1
464
Normal
-0.1
232
Normal
-0.1
1028
Normal
-0.1
383
Tumor
-0.1
171
Tumor
-0.1
744
Normal
-0.1
1042
Normal
-0.1
628
Normal
-0.1
214
Normal
-0.1
387
Tumor
-0.1
524
Normal
-0.1
616
Normal
-0.1
1032
Normal
-0.1
786
Normal
-0.1
412
Normal
-0.1
975
Tumor
-0.1
914
Normal
-0.1
686
Normal
-0.1
516
Normal
-0.1
572
Normal
-0.1
132
Normal
-0.1
954
Normal
-0.1
494
Normal
-0.1
912
Normal
-0.1
722
Normal
-0.1
386
Normal
-0.1
714
Normal
-0.1
1026
Normal
-0.1
861
Tumor
-0.1
186
Normal
-0.1
558
Normal
-0.1
966
Normal
-0.1
341
Tumor
-0.1
352
Normal
-0.1
738
Normal
-0.1
284
Normal
-0.1
964
Normal
-0.1
364
Normal
-0.1
148
Normal
-0.1
427
Tumor
-0.1
258
Normal
-0.1
1044
Normal
-0.1
982
Normal
-0.1
742
Normal
-0.1
395
Tumor
-0.1
353
Tumor
-0.1
554
Normal
-0.1
492
Normal
-0.1
862
Normal
-0.1
488
Normal
-0.1
696
Normal
-0.1
976
Normal
-0.1
354
Normal
-0.1
868
Normal
-0.1
218
Normal
-0.1
1015
Tumor
-0.1
723
Tumor
-0.1
664
Normal
-0.1
187
Tumor
-0.1
1022
Normal
-0.1
642
Normal
-0.1
538
Normal
-0.1
376
Normal
-0.1
564
Normal
-0.1
212
Normal
-0.2
498
Normal
-0.2
145
Tumor
-0.2
958
Normal
-0.2
111
Normal
-0.2
884
Normal
-0.2
648
Normal
-0.2
574
Normal
-0.2
666
Normal
-0.2
852
Normal
-0.2
221
Tumor
-0.2
222
Normal
-0.2
952
Normal
-0.2
756
Normal
-0.2
424
Normal
-0.2
362
Normal
-0.2
1046
Normal
-0.2
1045
Tumor
-0.2
864
Normal
-0.2
421
Tumor
-0.2
777
Tumor
-0.2
472
Normal
-0.2
526
Normal
-0.2
563
Tumor
-0.2
968
Normal
-0.2
195
Tumor
-0.2
477
Tumor
-0.2
568
Normal
-0.2
916
Normal
-0.2
448
Normal
-0.2
617
Tumor
-0.2
191
Tumor
-0.2
286
Normal
-0.2
882
Normal
-0.2
482
Normal
-0.2
938
Normal
-0.2
956
Normal
-0.2
342
Normal
-0.2
462
Normal
-0.2
484
Normal
-0.2
394
Normal
-0.2
388
Normal
-0.2
366
Normal
-0.2
662
Normal
-0.2
228
Normal
-0.2
955
Tumor
-0.2
874
Normal
-0.2
414
Normal
-0.2
358
Normal
-0.2
428
Normal
-0.2
518
Normal
-0.2
817
Tumor
-0.2
924
Normal
-0.2
746
Normal
-0.2
778
Normal
-0.2
514
Normal
-0.3
878
Normal
-0.3
716
Normal
-0.3
365
Tumor
-0.3
528
Normal
-0.3
698
Normal
-0.3
922
Normal
-0.3
546
Normal
-0.3
416
Normal
-0.3
863
Tumor
-0.3
627
Tumor
-0.3
1041
Tumor
-0.3
534
Normal
-0.3
913
Tumor
-0.3
422
Normal
-0.3
474
Normal
-0.3
926
Normal
-0.3
426
Normal
-0.3
911
Tumor
-0.4
918
Normal
-0.4
745
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
