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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1421.5
nTPM
GTEx:
1421.5
nTPM
FANTOM5:
1314.6
Scaled Tags Per Million
Pig:
3216.4
nTPM
Mouse:
7162.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA004946
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1421.5
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1421.5
Samples: 105
Max nTPM: 2769.2
Min nTPM: 267.8
Std nTPM: 562.2
Median nTPM:
246_1
77 years, male
2769.2
377_1
82 years, female
2541.5
376_1
75 years, female
2357.5
6_1
73 years, female
2342.4
319_1
81 years, male
2327.4
503_1
68 years, male
2317.1
163_1
78 years, male
2315.3
468_1
89 years, male
2284.9
425_1
59 years, female
2177.3
243_1
75 years, male
2163.4
526_1
61 years, male
2139.7
394_1
75 years, female
2135.9
335_1
73 years, female
2105.0
189_1
76 years, male
2098.2
266_1
85 years, male
2079.0
115_1
83 years, male
2078.6
265_1
87 years, male
2025.1
177_1
74 years, male
1990.2
9_1
66 years, female
1986.8
126_1
63 years, male
1982.4
229_1
69 years, female
1956.7
172_1
72 years, female
1950.6
389_1
86 years, female
1942.3
480_1
63 years, male
1928.3
349_1
83 years, male
1891.4
217_1
76 years, male
1879.1
286_1
68 years, female
1866.2
355_1
70 years, female
1863.8
405_1
91 years, male
1853.1
153_1
70 years, female
1851.9
251_1
78 years, male
1841.6
352_1
62 years, male
1819.3
386_1
76 years, male
1780.0
406_1
79 years, male
1765.5
356_1
87 years, female
1760.2
414_1
84 years, female
1758.4
292_1
71 years, male
1736.4
354_1
81 years, female
1735.0
316_1
62 years, male
1718.1
404_1
82 years, female
1715.9
518_1
75 years, female
1640.5
517_1
88 years, male
1634.8
318_1
68 years, male
1618.7
109_1
81 years, female
1611.6
415_1
77 years, female
1556.3
18_1
88 years, male
1484.8
254_1
77 years, female
1465.9
351_1
91 years, male
1456.3
396_1
62 years, male
1450.0
350_1
84 years, female
1435.5
17_1
71 years, male
1430.4
466_1
57 years, female
1374.2
324_1
76 years, male
1369.8
32_1
67 years, male
1342.7
375_1
74 years, female
1333.3
2_1
77 years, female
1322.2
447_1
81 years, male
1319.8
353_1
82 years, female
1319.2
348_1
84 years, male
1319.1
499_1
55 years, female
1294.3
384_1
83 years, male
1292.9
320_1
89 years, female
1289.0
293_1
68 years, female
1267.2
321_1
62 years, female
1258.2
162_1
79 years, female
1254.8
81_1
67 years, male
1249.3
120_1
70 years, female
1212.8
291_1
76 years, male
1201.7
142_1
61 years, female
1194.4
315_1
62 years, female
1169.2
379_1
60 years, male
1158.9
295_1
61 years, female
1055.0
288_1
66 years, female
1039.2
317_1
60 years, male
1010.7
452_1
88 years, female
969.3
149_1
88 years, male
966.9
117_1
61 years, male
950.4
264_1
73 years, female
937.4
145_1
84 years, male
929.4
99_1
64 years, male
923.4
35_1
74 years, female
905.7
137_1
83 years, male
898.9
43_1
64 years, female
896.5
4_1
88 years, female
891.5
506_1
65 years, male
856.7
347_1
72 years, male
827.0
322_1
76 years, male
808.6
308_1
70 years, female
807.1
313_1
79 years, female
805.1
311_1
78 years, male
803.6
413_1
59 years, female
784.1
237_1
82 years, male
753.4
139_1
64 years, female
746.5
314_1
67 years, male
722.4
173_1
67 years, male
702.8
218_1
71 years, female
655.8
495_1
57 years, female
630.3
501_1
88 years, male
572.8
307_1
66 years, female
552.9
42_1
85 years, male
528.8
119_1
70 years, female
527.6
490_1
67 years, female
498.8
89_1
63 years, male
469.8
41_1
94 years, female
403.2
491_1
89 years, female
267.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.