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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.1
192
Normal
1.0
313
Tumor
0.8
391
Tumor
0.8
877
Tumor
0.7
517
Tumor
0.7
257
Tumor
0.7
351
Tumor
0.7
815
Tumor
0.7
342
Normal
0.6
627
Tumor
0.6
953
Tumor
0.6
648
Normal
0.6
722
Normal
0.6
818
Normal
0.6
615
Tumor
0.6
328
Normal
0.6
186
Normal
0.6
368
Normal
0.6
358
Normal
0.5
1013
Tumor
0.5
756
Normal
0.5
1042
Normal
0.5
111
Normal
0.5
671
Tumor
0.5
666
Normal
0.5
393
Tumor
0.5
314
Normal
0.5
411
Tumor
0.5
354
Normal
0.5
964
Normal
0.5
365
Tumor
0.4
435
Tumor
0.4
217
Tumor
0.4
618
Normal
0.4
777
Tumor
0.4
498
Normal
0.4
132
Normal
0.4
568
Normal
0.4
114
Normal
0.4
332
Normal
0.4
642
Normal
0.4
816
Normal
0.4
262
Normal
0.4
344
Normal
0.4
628
Normal
0.4
662
Normal
0.4
113
Tumor
0.4
924
Normal
0.4
745
Tumor
0.4
574
Normal
0.4
746
Normal
0.4
465
Tumor
0.4
232
Normal
0.4
571
Tumor
0.4
148
Normal
0.4
366
Normal
0.4
944
Normal
0.4
352
Normal
0.4
128
Normal
0.4
196
Normal
0.3
884
Normal
0.3
785
Tumor
0.3
665
Tumor
0.3
126
Normal
0.3
386
Normal
0.3
127
Tumor
0.3
636
Normal
0.3
278
Normal
0.3
513
Tumor
0.3
564
Normal
0.3
267
Tumor
0.3
298
Normal
0.3
868
Normal
0.3
456
Normal
0.3
272
Normal
0.3
1022
Normal
0.3
384
Normal
0.3
445
Tumor
0.3
214
Normal
0.3
866
Normal
0.3
446
Normal
0.3
376
Normal
0.3
353
Tumor
0.3
912
Normal
0.3
138
Normal
0.3
464
Normal
0.3
1025
Tumor
0.3
1026
Normal
0.3
672
Normal
0.3
546
Normal
0.3
882
Normal
0.3
258
Normal
0.3
436
Normal
0.3
468
Normal
0.3
1043
Tumor
0.3
851
Tumor
0.3
1032
Normal
0.3
146
Normal
0.2
1041
Tumor
0.2
534
Normal
0.2
228
Normal
0.2
277
Tumor
0.2
616
Normal
0.2
388
Normal
0.2
136
Normal
0.2
938
Normal
0.2
554
Normal
0.2
663
Tumor
0.2
786
Normal
0.2
1045
Tumor
0.2
396
Normal
0.2
862
Normal
0.2
195
Tumor
0.2
956
Normal
0.2
286
Normal
0.2
124
Normal
0.2
172
Normal
0.2
723
Tumor
0.2
142
Normal
0.2
1046
Normal
0.2
364
Normal
0.2
738
Normal
0.2
222
Normal
0.2
664
Normal
0.2
224
Normal
0.2
423
Tumor
0.2
162
Normal
0.2
147
Tumor
0.2
452
Normal
0.2
392
Normal
0.2
312
Normal
0.2
984
Normal
0.2
573
Tumor
0.2
357
Tumor
0.2
914
Normal
0.2
518
Normal
0.2
755
Tumor
0.2
362
Normal
0.2
526
Normal
0.2
536
Normal
0.2
874
Normal
0.1
528
Normal
0.1
721
Tumor
0.1
824
Normal
0.1
963
Tumor
0.1
958
Normal
0.1
394
Normal
0.1
968
Normal
0.1
523
Tumor
0.1
416
Normal
0.1
911
Tumor
0.1
462
Normal
0.1
553
Tumor
0.1
858
Normal
0.1
432
Normal
0.1
341
Tumor
0.1
983
Tumor
0.1
327
Tumor
0.1
922
Normal
0.1
1016
Normal
0.1
356
Normal
0.1
188
Normal
0.1
125
Tumor
0.1
864
Normal
0.1
268
Normal
0.1
926
Normal
0.1
647
Tumor
0.1
171
Tumor
0.1
697
Tumor
0.1
852
Normal
0.1
466
Normal
0.1
361
Tumor
0.1
218
Normal
0.1
957
Tumor
0.1
331
Tumor
0.1
742
Normal
0.1
952
Normal
0.1
1044
Normal
0.1
141
Tumor
0.1
728
Normal
0.1
617
Tumor
0.1
744
Normal
0.1
444
Normal
0.1
426
Normal
0.1
558
Normal
0.1
976
Normal
0.1
955
Tumor
0.1
966
Normal
0.1
967
Tumor
0.1
367
Tumor
0.1
778
Normal
0.1
918
Normal
0.0
433
Tumor
0.0
161
Tumor
0.0
414
Normal
0.0
271
Tumor
0.0
695
Tumor
0.0
285
Tumor
0.0
213
Tumor
0.0
741
Tumor
0.0
472
Normal
0.0
212
Normal
0.0
814
Normal
0.0
514
Normal
0.0
572
Normal
0.0
714
Normal
0.0
434
Normal
0.0
538
Normal
0.0
724
Normal
0.0
375
Tumor
0.0
537
Tumor
0.0
231
Tumor
0.0
383
Tumor
0.0
567
Tumor
0.0
145
Tumor
0.0
424
Normal
0.0
1014
Normal
0.0
686
Normal
0.0
191
Tumor
0.0
422
Normal
0.0
112
Tumor
0.0
284
Normal
0.0
227
Tumor
0.0
412
Normal
0.0
954
Normal
0.0
982
Normal
-0.1
923
Tumor
-0.1
527
Tumor
-0.1
487
Tumor
-0.1
916
Normal
-0.1
261
Tumor
-0.1
635
Tumor
-0.1
878
Normal
-0.1
1028
Normal
-0.1
428
Normal
-0.1
1015
Tumor
-0.1
494
Normal
-0.1
463
Tumor
-0.1
867
Tumor
-0.1
461
Tumor
-0.1
915
Tumor
-0.1
425
Tumor
-0.1
1027
Tumor
-0.1
448
Normal
-0.1
661
Tumor
-0.1
484
Normal
-0.1
713
Tumor
-0.1
873
Tumor
-0.1
137
Tumor
-0.1
698
Normal
-0.1
481
Tumor
-0.1
311
Tumor
-0.1
516
Normal
-0.1
1021
Tumor
-0.1
943
Tumor
-0.1
131
Tumor
-0.1
861
Tumor
-0.1
427
Tumor
-0.2
297
Tumor
-0.2
515
Tumor
-0.2
921
Tumor
-0.2
524
Normal
-0.2
491
Tumor
-0.2
913
Tumor
-0.2
467
Tumor
-0.2
488
Normal
-0.2
557
Tumor
-0.2
823
Tumor
-0.2
641
Tumor
-0.2
813
Tumor
-0.2
563
Tumor
-0.2
387
Tumor
-0.2
857
Tumor
-0.2
447
Tumor
-0.2
343
Tumor
-0.2
716
Normal
-0.2
917
Tumor
-0.2
455
Tumor
-0.2
881
Tumor
-0.2
743
Tumor
-0.2
482
Normal
-0.2
696
Normal
-0.2
951
Tumor
-0.2
187
Tumor
-0.2
978
Normal
-0.2
977
Tumor
-0.2
413
Tumor
-0.3
185
Tumor
-0.3
431
Tumor
-0.3
123
Tumor
-0.3
965
Tumor
-0.3
451
Tumor
-0.3
135
Tumor
-0.3
415
Tumor
-0.3
283
Tumor
-0.3
545
Tumor
-0.3
421
Tumor
-0.3
385
Tumor
-0.3
355
Tumor
-0.3
474
Normal
-0.3
525
Tumor
-0.3
727
Tumor
-0.3
533
Tumor
-0.3
981
Tumor
-0.3
865
Tumor
-0.4
937
Tumor
-0.4
1031
Tumor
-0.4
737
Tumor
-0.4
363
Tumor
-0.4
483
Tumor
-0.4
883
Tumor
-0.5
817
Tumor
-0.5
211
Tumor
-0.5
715
Tumor
-0.5
478
Normal
-0.5
223
Tumor
-0.5
497
Tumor
-0.5
492
Normal
-0.5
535
Tumor
-0.5
221
Tumor
-0.5
975
Tumor
-0.5
477
Tumor
-0.6
443
Tumor
-0.6
925
Tumor
-0.7
395
Tumor
-0.7
471
Tumor
-0.8
493
Tumor
-0.8
685
Tumor
-0.9
473
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
