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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
546.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
390.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
314.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
294.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
288.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
280.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
228.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
228.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
224.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
219.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
215.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
210.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
196.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
195.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
193.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
193.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
186.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
184.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
181.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
177.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
176.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
174.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
173.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
173.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
171.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
167.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
162.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
162.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
160.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
160.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
160.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
159.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
158.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
158.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
157.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
156.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
155.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
151.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
150.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
150.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
147.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
147.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
147.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
145.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
145.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
143.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
141.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
141.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
136.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
136.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
136.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
135.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
135.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
134.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
133.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
133.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
133.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
132.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
131.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
130.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
129.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
129.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
128.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
127.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
127.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
126.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
126.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
124.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
123.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
122.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
122.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
121.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
120.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
120.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
119.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
117.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
117.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
117.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
117.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
116.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
116.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
115.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
115.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
115.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
115.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
115.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
114.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
114.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
111.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
111.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
109.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
109.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
109.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
108.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
106.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
103.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
103.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
103.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
101.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
101.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
99.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
98.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
98.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
98.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
97.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
97.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
97.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
96.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
96.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
96.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
96.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
95.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
95.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
94.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
94.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
94.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
94.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
94.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
94.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
93.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
93.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
93.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
92.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
92.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
92.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
92.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
91.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
91.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
91.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
91.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
90.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
90.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
90.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
90.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
89.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
89.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
89.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
89.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
89.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
89.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
89.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
89.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
88.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
88.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
88.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
87.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
87.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
87.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
86.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
86.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
85.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
85.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
84.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
84.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
83.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
83.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
81.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
81.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
81.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
80.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
80.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
80.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
79.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
79.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
79.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
79.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
79.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
79.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
78.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
78.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
78.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
77.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
76.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
76.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
76.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
76.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
75.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
75.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
75.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
75.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
75.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
75.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
74.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
74.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
74.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
73.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
72.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
71.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
71.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
70.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
69.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
69.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
69.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
69.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
68.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
67.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
67.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
67.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
67.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
67.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
66.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
66.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
66.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
66.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
66.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
65.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
65.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
65.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
65.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
65.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
64.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
64.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
64.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
64.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
63.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
63.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
63.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
62.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
62.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
62.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
61.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
61.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
61.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
60.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
60.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
59.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
59.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
59.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
59.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
59.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
58.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
58.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
58.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
56.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
55.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
55.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
54.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
54.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
54.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
53.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
53.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
53.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
52.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
52.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
51.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
50.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
50.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
50.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
49.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
48.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
77.1
Number of samples
231
Samples
Sample
Description
TPM
DO45269
0 years, male, NA, stage:3, alive, 750 days
591.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
473.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
349.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
299.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
249.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
211.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
199.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
189.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
181.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
173.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
172.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
169.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
162.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
158.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
158.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
157.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
151.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
149.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
149.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
147.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
143.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
143.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
141.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
138.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
135.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
132.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
131.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
129.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
128.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
126.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
124.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
122.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
118.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
118.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
116.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
115.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
114.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
114.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
109.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
107.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
106.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
105.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
104.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
104.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
101.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
99.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
99.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
99.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
99.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
97.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
96.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
96.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
96.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
95.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
94.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
94.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
91.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
89.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
89.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
88.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
85.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
84.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
84.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
83.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
83.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
82.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
81.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
81.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
79.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
79.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
77.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
76.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
76.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
75.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
75.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
75.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
74.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
73.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
71.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
71.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
71.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
70.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
70.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
69.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
67.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
65.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
65.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
64.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
64.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
64.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
63.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
62.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
62.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
62.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
60.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
59.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
59.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
58.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
57.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
56.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
56.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
56.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
56.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
56.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
56.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
55.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
55.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
54.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
54.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
53.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
51.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
51.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
50.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
48.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
47.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
45.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
36.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
0.9
965
Tumor
0.9
977
Tumor
0.8
131
Tumor
0.8
473
Tumor
0.8
967
Tumor
0.8
1021
Tumor
0.7
1031
Tumor
0.7
951
Tumor
0.6
545
Tumor
0.6
517
Tumor
0.6
867
Tumor
0.6
487
Tumor
0.6
497
Tumor
0.5
937
Tumor
0.5
411
Tumor
0.5
523
Tumor
0.5
1015
Tumor
0.5
277
Tumor
0.5
1013
Tumor
0.5
483
Tumor
0.5
743
Tumor
0.5
413
Tumor
0.4
957
Tumor
0.4
777
Tumor
0.4
431
Tumor
0.4
221
Tumor
0.4
963
Tumor
0.4
953
Tumor
0.4
112
Tumor
0.4
1025
Tumor
0.4
881
Tumor
0.4
663
Tumor
0.4
227
Tumor
0.4
477
Tumor
0.4
527
Tumor
0.4
465
Tumor
0.4
923
Tumor
0.4
727
Tumor
0.4
285
Tumor
0.4
817
Tumor
0.4
395
Tumor
0.3
161
Tumor
0.3
877
Tumor
0.3
715
Tumor
0.3
1041
Tumor
0.3
385
Tumor
0.3
493
Tumor
0.3
351
Tumor
0.3
755
Tumor
0.3
423
Tumor
0.3
785
Tumor
0.3
355
Tumor
0.3
271
Tumor
0.3
647
Tumor
0.3
515
Tumor
0.3
123
Tumor
0.3
975
Tumor
0.3
861
Tumor
0.3
363
Tumor
0.3
921
Tumor
0.3
981
Tumor
0.3
467
Tumor
0.2
553
Tumor
0.2
425
Tumor
0.2
367
Tumor
0.2
445
Tumor
0.2
443
Tumor
0.2
741
Tumor
0.2
261
Tumor
0.2
721
Tumor
0.2
415
Tumor
0.2
685
Tumor
0.2
498
Normal
0.2
492
Normal
0.2
724
Normal
0.2
435
Tumor
0.2
917
Tumor
0.2
513
Tumor
0.2
433
Tumor
0.2
471
Tumor
0.2
494
Normal
0.2
913
Tumor
0.2
983
Tumor
0.2
478
Normal
0.2
911
Tumor
0.2
488
Normal
0.2
873
Tumor
0.1
635
Tumor
0.1
267
Tumor
0.1
223
Tumor
0.1
925
Tumor
0.1
815
Tumor
0.1
524
Normal
0.1
686
Normal
0.1
535
Tumor
0.1
484
Normal
0.1
546
Normal
0.1
427
Tumor
0.1
463
Tumor
0.1
461
Tumor
0.1
813
Tumor
0.1
538
Normal
0.1
387
Tumor
0.1
327
Tumor
0.1
661
Tumor
0.1
865
Tumor
0.1
557
Tumor
0.1
455
Tumor
0.1
141
Tumor
0.1
393
Tumor
0.1
356
Normal
0.1
147
Tumor
0.1
744
Normal
0.1
113
Tumor
0.1
916
Normal
0.1
571
Tumor
0.1
857
Tumor
0.1
353
Tumor
0.1
211
Tumor
0.1
516
Normal
0.1
738
Normal
0.1
915
Tumor
0.1
331
Tumor
0.1
1043
Tumor
0.1
823
Tumor
0.1
537
Tumor
0.1
943
Tumor
0.0
723
Tumor
0.0
128
Normal
0.0
313
Tumor
0.0
955
Tumor
0.0
171
Tumor
0.0
426
Normal
0.0
191
Tumor
0.0
491
Tumor
0.0
742
Normal
0.0
341
Tumor
0.0
728
Normal
0.0
665
Tumor
0.0
573
Tumor
0.0
481
Tumor
0.0
883
Tumor
0.0
966
Normal
0.0
851
Tumor
0.0
924
Normal
0.0
567
Tumor
0.0
217
Tumor
0.0
852
Normal
0.0
536
Normal
0.0
528
Normal
0.0
137
Tumor
0.0
714
Normal
0.0
814
Normal
0.0
533
Tumor
0.0
192
Normal
0.0
127
Tumor
0.0
737
Tumor
0.0
213
Tumor
0.0
944
Normal
0.0
534
Normal
0.0
451
Tumor
0.0
462
Normal
0.0
978
Normal
0.0
111
Normal
0.0
696
Normal
0.0
185
Tumor
0.0
224
Normal
0.0
328
Normal
0.0
984
Normal
-0.1
352
Normal
-0.1
518
Normal
-0.1
187
Tumor
-0.1
878
Normal
-0.1
314
Normal
-0.1
954
Normal
-0.1
482
Normal
-0.1
858
Normal
-0.1
666
Normal
-0.1
365
Tumor
-0.1
332
Normal
-0.1
412
Normal
-0.1
1028
Normal
-0.1
716
Normal
-0.1
746
Normal
-0.1
231
Tumor
-0.1
938
Normal
-0.1
697
Tumor
-0.1
968
Normal
-0.1
114
Normal
-0.1
361
Tumor
-0.1
444
Normal
-0.1
344
Normal
-0.1
312
Normal
-0.1
818
Normal
-0.1
1045
Tumor
-0.1
278
Normal
-0.1
222
Normal
-0.1
298
Normal
-0.1
824
Normal
-0.1
1044
Normal
-0.1
297
Tumor
-0.1
1014
Normal
-0.1
126
Normal
-0.1
447
Tumor
-0.1
434
Normal
-0.1
572
Normal
-0.1
364
Normal
-0.1
124
Normal
-0.1
343
Tumor
-0.1
554
Normal
-0.1
664
Normal
-0.1
196
Normal
-0.1
218
Normal
-0.1
422
Normal
-0.1
662
Normal
-0.1
912
Normal
-0.1
648
Normal
-0.1
722
Normal
-0.1
354
Normal
-0.1
195
Tumor
-0.1
558
Normal
-0.1
922
Normal
-0.1
514
Normal
-0.1
866
Normal
-0.1
816
Normal
-0.1
375
Tumor
-0.1
448
Normal
-0.1
472
Normal
-0.1
525
Tumor
-0.1
863
Tumor
-0.2
474
Normal
-0.2
745
Tumor
-0.2
135
Tumor
-0.2
526
Normal
-0.2
383
Tumor
-0.2
414
Normal
-0.2
756
Normal
-0.2
976
Normal
-0.2
362
Normal
-0.2
864
Normal
-0.2
416
Normal
-0.2
283
Tumor
-0.2
958
Normal
-0.2
882
Normal
-0.2
563
Tumor
-0.2
926
Normal
-0.2
884
Normal
-0.2
424
Normal
-0.2
436
Normal
-0.2
464
Normal
-0.2
672
Normal
-0.2
778
Normal
-0.2
358
Normal
-0.2
952
Normal
-0.2
142
Normal
-0.2
162
Normal
-0.2
671
Tumor
-0.2
148
Normal
-0.2
713
Tumor
-0.2
311
Tumor
-0.2
918
Normal
-0.2
1032
Normal
-0.2
862
Normal
-0.2
1026
Normal
-0.2
214
Normal
-0.2
786
Normal
-0.2
964
Normal
-0.2
698
Normal
-0.2
564
Normal
-0.2
272
Normal
-0.2
284
Normal
-0.2
466
Normal
-0.2
914
Normal
-0.2
396
Normal
-0.2
617
Tumor
-0.3
568
Normal
-0.3
391
Tumor
-0.3
172
Normal
-0.3
384
Normal
-0.3
982
Normal
-0.3
188
Normal
-0.3
1016
Normal
-0.3
1027
Tumor
-0.3
212
Normal
-0.3
1022
Normal
-0.3
386
Normal
-0.3
874
Normal
-0.3
376
Normal
-0.3
228
Normal
-0.3
956
Normal
-0.3
286
Normal
-0.3
357
Tumor
-0.3
146
Normal
-0.3
342
Normal
-0.3
428
Normal
-0.3
136
Normal
-0.3
186
Normal
-0.3
468
Normal
-0.3
125
Tumor
-0.3
392
Normal
-0.3
636
Normal
-0.3
268
Normal
-0.4
432
Normal
-0.4
1042
Normal
-0.4
446
Normal
-0.4
456
Normal
-0.4
452
Normal
-0.4
145
Tumor
-0.4
421
Tumor
-0.4
394
Normal
-0.4
257
Tumor
-0.4
138
Normal
-0.4
366
Normal
-0.4
615
Tumor
-0.5
262
Normal
-0.5
132
Normal
-0.5
368
Normal
-0.5
574
Normal
-0.5
641
Tumor
-0.5
1046
Normal
-0.5
868
Normal
-0.5
616
Normal
-0.5
618
Normal
-0.5
628
Normal
-0.5
388
Normal
-0.6
642
Normal
-0.6
627
Tumor
-0.6
232
Normal
-0.7
258
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.