MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:42.2 nTPM
GTEx:28.0 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:7.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
2586 Male, age 75, left hemisphere 46.3
2666 Male, age 74, left hemisphere 43.8
2828 Female, age 72, unknown 40.6
1870 Female, age 42, unknown 39.7
1830 Male, age 51, unknown 39.3
2411 Female, age 72, unknown 39.0
1833 Male, age 53, unknown 38.3
1827 Male, age 72, unknown 34.3
2019 Male, age 18, unknown 34.2
2219 Male, age 76, both hemispheres 33.6
Dorsal raphe nucleus
nTPM: 38.3
2047 Male, age 72, unknown 43.7
2016 Female, age 72, unknown 41.4
2750 Male, age 76, both hemispheres 37.4
1828 Male, age 53, unknown 34.9
2298 Female, age 72, unknown 34.1
Inferior colliculus
nTPM: 30.5
1848 Female, age 42, unknown 33.1
2849 Male, age 72, unknown 30.7
2097 Female, age 72, unknown 29.3
1890 Male, age 53, unknown 29.0
Median raphe nucleus
nTPM: 39.4
2220 Male, age 76, midline 39.4
Periaquaductal grey, anterior
nTPM: 34.2
1795 Male, age 51, unknown 36.1
1947 Male, age 18, unknown 33.9
2502 Female, age 75, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 38.8
1840 Male, age 53, unknown 41.8
1831 Male, age 72, unknown 39.1
2850 Male, age 76, both hemispheres 37.5
2464 Female, age 72, unknown 36.8
Periaquaductal grey, lateral
nTPM: 36.6
2053 Male, age 18, unknown 40.0
2140 Male, age 76, both hemispheres 36.4
2272 Male, age 74, both hemispheres 33.3
Pretectal area
nTPM: 33.6
2825 Male, age 18, unknown 39.6
2407 Male, age 75, both hemispheres 39.2
2316 Male, age 76, right hemisphere 37.2
2224 Female, age 72, unknown 36.0
1815 Male, age 53, unknown 34.2
2273 Male, age 74, both hemispheres 32.5
1944 Female, age 72, unknown 32.3
2007 Male, age 72, unknown 30.4
1817 Female, age 42, unknown 30.1
1816 Male, age 51, unknown 29.3
2667 Female, age 75, unknown 29.3
Red nucleus
nTPM: 39.3
2588 Male, age 74, left hemisphere 44.0
2584 Male, age 75, left hemisphere 43.5
1904 Male, age 53, unknown 42.2
1954 Female, age 42, unknown 41.3
2503 Female, age 72, unknown 40.6
2227 Male, age 72, unknown 39.2
1865 Male, age 51, unknown 37.9
2769 Male, age 72, unknown 37.9
1821 Female, age 72, unknown 37.8
2785 Male, age 18, unknown 36.0
2725 Female, age 75, unknown 35.8
2823 Male, age 76, right hemisphere 35.5
Substantia nigra
nTPM: 42.2
2590 Female, age 75, unknown 47.9
2409 Female, age 72, unknown 47.2
2665 Male, age 74, both hemispheres 46.3
2583 Male, age 75, right hemisphere 46.1
2699 Male, age 18, unknown 45.3
2241 Male, age 72, unknown 43.8
1851 Male, age 51, unknown 40.7
1916 Female, age 42, unknown 37.4
1941 Male, age 53, unknown 34.6
1889 Female, age 72, unknown 33.0
Superior colliculus
nTPM: 35.2
2668 Female, age 75, unknown 40.0
2664 Male, age 75, both hemispheres 39.7
1839 Male, age 51, unknown 38.5
1995 Male, age 72, unknown 37.0
1913 Female, age 42, unknown 36.3
2587 Male, age 74, left hemisphere 35.0
1796 Male, age 53, unknown 34.6
2087 Female, age 72, unknown 33.8
2261 Male, age 18, unknown 30.9
1895 Male, age 76, right hemisphere 26.6
Ventral tegmental area
nTPM: 40.3
2021 Male, age 53, unknown 47.8
2223 Female, age 72, unknown 42.1
1942 Male, age 51, unknown 41.4
1915 Female, age 42, unknown 40.0
2410 Female, age 72, unknown 36.1
2218 Male, age 76, both hemispheres 34.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 84.8
Min nTPM: 8.8
Std nTPM: 11.9
Median nTPM: 25.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 66.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 61.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 51.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 50.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 50.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 49.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 48.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 47.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 46.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.5
Sample A Female 12.6
Sample B Female 12.6
Sample C Male 9.5
Sample D Male 10.0
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 14.0
Min nTPM: 5.9
Sample A Female 14.0
Sample B Female 10.2
Sample C Male 6.9
Sample D Male 5.9
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 10.7
Min nTPM: 8.1
Sample B Female 9.6
Sample C Male 10.7
Sample D Male 8.1
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 7.7
Sample A Female 9.7
Sample B Female 15.8
Sample C Male 8.2
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.4
Sample A Male 7.9
Sample B Male 7.9
Sample C Female 7.2
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68799095 Antisense, RP_050217_02_A07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org