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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACTN4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
447.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
207.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
196.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
161.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
140.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
139.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
132.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
128.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
128.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
127.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
126.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
125.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
122.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
120.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
117.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
114.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
111.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
110.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
110.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
106.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
102.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
100.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
96.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
93.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
93.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
93.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
91.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
88.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
87.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
86.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
85.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
85.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
84.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
84.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
83.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
83.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
81.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
80.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
76.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
75.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
73.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
70.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
70.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
70.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
69.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
67.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
67.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
66.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
65.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
64.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
63.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
63.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
62.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
60.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
60.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
59.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
58.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
57.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
56.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
54.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
54.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
54.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
54.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
52.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
49.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
46.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
45.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
42.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
42.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
34.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACTN4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.4
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
496.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
251.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
237.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
188.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
185.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
182.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
175.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
175.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
174.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
163.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
159.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
157.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
156.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
156.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
151.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
150.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
149.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
147.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
143.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
141.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
140.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
134.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
133.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
132.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
132.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
131.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
128.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
128.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
125.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
124.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
121.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
121.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
121.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
116.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
114.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
114.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
114.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
113.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
110.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
108.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
105.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
105.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
105.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
104.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
103.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
102.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
102.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
101.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
100.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
97.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
96.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
95.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
95.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
94.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
94.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
94.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
93.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
92.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
92.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
92.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
91.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
89.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
88.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
87.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
87.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
86.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
86.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
85.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
84.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
84.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
84.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
83.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
82.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
81.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
81.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
80.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
80.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
80.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
79.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
78.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
78.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
77.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
77.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
76.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
75.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
75.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
75.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
74.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
74.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
73.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
73.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
73.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
73.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
73.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
72.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
72.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
72.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
72.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
71.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
71.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
71.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
71.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
71.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
71.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
71.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
70.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
70.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
70.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
70.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
70.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
70.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
70.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
70.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
69.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
69.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
69.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
68.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
66.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
65.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
65.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
64.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
64.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
63.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
62.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
61.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
61.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
61.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
60.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
58.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
58.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
58.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
58.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
57.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
56.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
56.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
55.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
55.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
55.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
55.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
54.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
53.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
51.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
51.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
51.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
50.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
50.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
49.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
48.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
45.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
44.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
41.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
38.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.7
463
Tumor
1.0
425
Tumor
1.0
341
Tumor
0.7
443
Tumor
0.7
112
Tumor
0.6
487
Tumor
0.5
1027
Tumor
0.5
192
Normal
0.5
481
Tumor
0.5
975
Tumor
0.5
671
Tumor
0.5
498
Normal
0.4
536
Normal
0.4
967
Tumor
0.4
538
Normal
0.4
478
Normal
0.4
627
Tumor
0.4
785
Tumor
0.3
567
Tumor
0.3
344
Normal
0.3
231
Tumor
0.3
517
Tumor
0.3
917
Tumor
0.3
916
Normal
0.3
635
Tumor
0.3
365
Tumor
0.3
515
Tumor
0.3
421
Tumor
0.3
852
Normal
0.3
433
Tumor
0.3
445
Tumor
0.3
911
Tumor
0.3
497
Tumor
0.3
958
Normal
0.2
954
Normal
0.2
963
Tumor
0.2
297
Tumor
0.2
786
Normal
0.2
982
Normal
0.2
415
Tumor
0.2
327
Tumor
0.2
977
Tumor
0.2
545
Tumor
0.2
124
Normal
0.2
483
Tumor
0.2
394
Normal
0.2
268
Normal
0.2
867
Tumor
0.2
878
Normal
0.2
686
Normal
0.2
744
Normal
0.2
222
Normal
0.2
444
Normal
0.2
218
Normal
0.2
746
Normal
0.2
162
Normal
0.2
342
Normal
0.2
824
Normal
0.2
277
Tumor
0.2
527
Tumor
0.2
924
Normal
0.2
976
Normal
0.2
462
Normal
0.2
641
Tumor
0.2
716
Normal
0.2
938
Normal
0.2
214
Normal
0.2
212
Normal
0.2
723
Tumor
0.2
434
Normal
0.2
223
Tumor
0.2
528
Normal
0.2
1028
Normal
0.2
488
Normal
0.2
127
Tumor
0.2
742
Normal
0.2
921
Tumor
0.2
448
Normal
0.2
224
Normal
0.2
392
Normal
0.2
284
Normal
0.2
943
Tumor
0.2
332
Normal
0.2
865
Tumor
0.2
884
Normal
0.2
922
Normal
0.2
868
Normal
0.1
778
Normal
0.1
368
Normal
0.1
874
Normal
0.1
474
Normal
0.1
436
Normal
0.1
881
Tumor
0.1
737
Tumor
0.1
472
Normal
0.1
866
Normal
0.1
863
Tumor
0.1
482
Normal
0.1
466
Normal
0.1
738
Normal
0.1
666
Normal
0.1
818
Normal
0.1
414
Normal
0.1
492
Normal
0.1
364
Normal
0.1
126
Normal
0.1
964
Normal
0.1
524
Normal
0.1
563
Tumor
0.1
745
Tumor
0.1
816
Normal
0.1
142
Normal
0.1
464
Normal
0.1
484
Normal
0.1
882
Normal
0.1
354
Normal
0.1
642
Normal
0.1
714
Normal
0.1
516
Normal
0.1
412
Normal
0.1
298
Normal
0.1
558
Normal
0.1
128
Normal
0.1
636
Normal
0.1
146
Normal
0.1
426
Normal
0.1
314
Normal
0.1
461
Tumor
0.1
422
Normal
0.1
968
Normal
0.1
648
Normal
0.1
416
Normal
0.1
136
Normal
0.1
955
Tumor
0.1
432
Normal
0.1
858
Normal
0.1
546
Normal
0.1
918
Normal
0.1
386
Normal
0.1
286
Normal
0.1
311
Tumor
0.1
534
Normal
0.1
172
Normal
0.1
698
Normal
0.1
944
Normal
0.1
185
Tumor
0.1
647
Tumor
0.1
616
Normal
0.1
554
Normal
0.1
388
Normal
0.1
393
Tumor
0.1
966
Normal
0.1
572
Normal
0.1
196
Normal
0.1
328
Normal
0.1
423
Tumor
0.1
477
Tumor
0.1
618
Normal
0.1
271
Tumor
0.1
1022
Normal
0.1
574
Normal
0.1
285
Tumor
0.1
978
Normal
0.1
312
Normal
0.1
376
Normal
0.1
456
Normal
0.1
452
Normal
0.1
715
Tumor
0.1
672
Normal
0.1
518
Normal
0.1
213
Tumor
0.1
862
Normal
0.1
1045
Tumor
0.1
494
Normal
0.1
188
Normal
0.1
756
Normal
0.1
493
Tumor
0.1
221
Tumor
0.1
857
Tumor
0.1
1044
Normal
0.1
553
Tumor
0.1
664
Normal
0.1
984
Normal
0.1
721
Tumor
0.1
617
Tumor
0.1
352
Normal
0.1
278
Normal
0.1
132
Normal
0.1
727
Tumor
0.1
138
Normal
0.1
356
Normal
0.1
131
Tumor
0.0
366
Normal
0.0
814
Normal
0.0
428
Normal
0.0
696
Normal
0.0
1032
Normal
0.0
526
Normal
0.0
468
Normal
0.0
396
Normal
0.0
228
Normal
0.0
186
Normal
0.0
362
Normal
0.0
514
Normal
0.0
424
Normal
0.0
568
Normal
0.0
956
Normal
0.0
258
Normal
0.0
913
Tumor
0.0
1014
Normal
0.0
1046
Normal
0.0
864
Normal
0.0
137
Tumor
0.0
662
Normal
0.0
1026
Normal
0.0
926
Normal
0.0
728
Normal
0.0
111
Normal
0.0
262
Normal
0.0
915
Tumor
0.0
523
Tumor
0.0
722
Normal
0.0
451
Tumor
0.0
413
Tumor
0.0
465
Tumor
0.0
455
Tumor
0.0
148
Normal
0.0
446
Normal
0.0
272
Normal
0.0
195
Tumor
0.0
1016
Normal
0.0
883
Tumor
0.0
823
Tumor
0.0
914
Normal
0.0
685
Tumor
0.0
217
Tumor
0.0
431
Tumor
0.0
384
Normal
0.0
813
Tumor
0.0
755
Tumor
0.0
628
Normal
0.0
375
Tumor
0.0
564
Normal
0.0
358
Normal
0.0
353
Tumor
0.0
114
Normal
0.0
777
Tumor
0.0
141
Tumor
-0.1
1015
Tumor
-0.1
447
Tumor
-0.1
147
Tumor
-0.1
331
Tumor
-0.1
357
Tumor
-0.1
912
Normal
-0.1
232
Normal
-0.1
1031
Tumor
-0.1
817
Tumor
-0.1
363
Tumor
-0.1
1042
Normal
-0.1
427
Tumor
-0.1
171
Tumor
-0.1
513
Tumor
-0.1
361
Tumor
-0.1
1043
Tumor
-0.1
873
Tumor
-0.1
615
Tumor
-0.1
261
Tumor
-0.2
355
Tumor
-0.2
571
Tumor
-0.2
741
Tumor
-0.2
395
Tumor
-0.2
435
Tumor
-0.2
191
Tumor
-0.2
1021
Tumor
-0.2
187
Tumor
-0.2
1025
Tumor
-0.2
467
Tumor
-0.2
267
Tumor
-0.2
125
Tumor
-0.2
383
Tumor
-0.2
473
Tumor
-0.2
135
Tumor
-0.2
663
Tumor
-0.2
923
Tumor
-0.2
815
Tumor
-0.2
145
Tumor
-0.3
983
Tumor
-0.3
937
Tumor
-0.3
343
Tumor
-0.3
385
Tumor
-0.3
1041
Tumor
-0.3
953
Tumor
-0.3
161
Tumor
-0.3
661
Tumor
-0.3
123
Tumor
-0.3
557
Tumor
-0.3
257
Tumor
-0.3
965
Tumor
-0.3
471
Tumor
-0.3
861
Tumor
-0.3
283
Tumor
-0.3
113
Tumor
-0.3
1013
Tumor
-0.3
211
Tumor
-0.4
713
Tumor
-0.4
743
Tumor
-0.4
952
Normal
-0.4
573
Tumor
-0.4
697
Tumor
-0.4
981
Tumor
-0.4
877
Tumor
-0.4
957
Tumor
-0.4
387
Tumor
-0.4
491
Tumor
-0.5
313
Tumor
-0.5
851
Tumor
-0.5
665
Tumor
-0.5
411
Tumor
-0.5
391
Tumor
-0.5
367
Tumor
-0.5
724
Normal
-0.5
537
Tumor
-0.6
925
Tumor
-0.6
227
Tumor
-0.6
525
Tumor
-0.6
535
Tumor
-0.6
351
Tumor
-0.7
533
Tumor
-0.8
951
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.