We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGLS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
238.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
196.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
188.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
185.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
177.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
162.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
157.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
151.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
148.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
148.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
147.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
145.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
138.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
133.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
129.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
126.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
124.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
123.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
121.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
120.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
113.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
112.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
112.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
108.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
108.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
108.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
107.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
105.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
104.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
103.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
102.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
100.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
99.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
97.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
95.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
93.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
92.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
92.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
90.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
89.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
88.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
87.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
86.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
83.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
83.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
82.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
82.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
80.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
79.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
79.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
78.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
78.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
77.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
76.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
76.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
75.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
75.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
75.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
74.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
73.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
73.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
73.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
72.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
71.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
71.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
70.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
70.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
69.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
69.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
69.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
68.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
68.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
68.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
67.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
67.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
67.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
66.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
64.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
64.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
64.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
63.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
63.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
63.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
63.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
62.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
61.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
61.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
61.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
59.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
59.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
59.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
59.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
58.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
58.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
58.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
57.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
57.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
56.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
55.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
54.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
53.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
52.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
52.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
52.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
51.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
51.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
50.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
50.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
49.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
49.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
49.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
48.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
48.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
47.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
47.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
47.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
47.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
46.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
46.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
46.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
45.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
44.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
43.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
43.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
42.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
42.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
42.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
39.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
37.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
36.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
30.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGLS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
104.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
100.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
96.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
94.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
89.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
88.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
84.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
82.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
81.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
80.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
78.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
67.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
66.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
64.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
64.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
64.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
63.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
58.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
57.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
49.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
47.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
0.8
571
Tumor
0.7
981
Tumor
0.6
435
Tumor
0.6
436
Normal
0.5
196
Normal
0.4
742
Normal
0.4
298
Normal
0.4
358
Normal
0.4
222
Normal
0.4
114
Normal
0.4
342
Normal
0.4
353
Tumor
0.4
741
Tumor
0.4
218
Normal
0.4
186
Normal
0.4
426
Normal
0.4
432
Normal
0.3
278
Normal
0.3
111
Normal
0.3
124
Normal
0.3
746
Normal
0.3
394
Normal
0.3
723
Tumor
0.3
414
Normal
0.3
148
Normal
0.3
388
Normal
0.3
738
Normal
0.3
618
Normal
0.3
354
Normal
0.3
446
Normal
0.3
464
Normal
0.3
332
Normal
0.3
786
Normal
0.3
267
Tumor
0.3
756
Normal
0.3
192
Normal
0.3
698
Normal
0.3
344
Normal
0.3
386
Normal
0.3
422
Normal
0.3
132
Normal
0.3
967
Tumor
0.3
546
Normal
0.3
368
Normal
0.3
162
Normal
0.3
214
Normal
0.3
664
Normal
0.3
482
Normal
0.3
744
Normal
0.3
126
Normal
0.3
456
Normal
0.3
128
Normal
0.3
452
Normal
0.3
366
Normal
0.2
396
Normal
0.2
228
Normal
0.2
424
Normal
0.2
938
Normal
0.2
376
Normal
0.2
136
Normal
0.2
384
Normal
0.2
444
Normal
0.2
862
Normal
0.2
858
Normal
0.2
428
Normal
0.2
392
Normal
0.2
356
Normal
0.2
232
Normal
0.2
728
Normal
0.2
778
Normal
0.2
146
Normal
0.2
217
Tumor
0.2
1016
Normal
0.2
364
Normal
0.2
448
Normal
0.2
824
Normal
0.2
864
Normal
0.2
258
Normal
0.2
462
Normal
0.2
352
Normal
0.2
172
Normal
0.2
137
Tumor
0.2
286
Normal
0.2
221
Tumor
0.2
362
Normal
0.2
272
Normal
0.2
912
Normal
0.2
534
Normal
0.2
966
Normal
0.2
722
Normal
0.2
195
Tumor
0.2
1044
Normal
0.2
642
Normal
0.2
312
Normal
0.2
466
Normal
0.2
481
Tumor
0.2
1046
Normal
0.2
866
Normal
0.2
662
Normal
0.2
914
Normal
0.2
868
Normal
0.2
672
Normal
0.2
472
Normal
0.2
188
Normal
0.1
954
Normal
0.1
1014
Normal
0.1
616
Normal
0.1
924
Normal
0.1
434
Normal
0.1
138
Normal
0.1
231
Tumor
0.1
666
Normal
0.1
468
Normal
0.1
314
Normal
0.1
648
Normal
0.1
1032
Normal
0.1
463
Tumor
0.1
1022
Normal
0.1
568
Normal
0.1
926
Normal
0.1
545
Tumor
0.1
1026
Normal
0.1
661
Tumor
0.1
968
Normal
0.1
212
Normal
0.1
262
Normal
0.1
952
Normal
0.1
391
Tumor
0.1
878
Normal
0.1
498
Normal
0.1
882
Normal
0.1
982
Normal
0.1
123
Tumor
0.1
423
Tumor
0.1
142
Normal
0.1
431
Tumor
0.1
564
Normal
0.1
958
Normal
0.1
984
Normal
0.1
628
Normal
0.1
365
Tumor
0.1
978
Normal
0.1
425
Tumor
0.1
513
Tumor
0.1
923
Tumor
0.1
1043
Tumor
0.1
227
Tumor
0.1
328
Normal
0.1
818
Normal
0.1
518
Normal
0.1
956
Normal
0.1
874
Normal
0.1
416
Normal
0.1
488
Normal
0.1
268
Normal
0.1
955
Tumor
0.1
816
Normal
0.1
714
Normal
0.1
474
Normal
0.1
224
Normal
0.1
737
Tumor
0.1
343
Tumor
0.1
686
Normal
0.1
538
Normal
0.1
727
Tumor
0.1
413
Tumor
0.0
636
Normal
0.0
478
Normal
0.0
716
Normal
0.0
363
Tumor
0.0
528
Normal
0.0
516
Normal
0.0
461
Tumor
0.0
944
Normal
0.0
785
Tumor
0.0
641
Tumor
0.0
412
Normal
0.0
964
Normal
0.0
976
Normal
0.0
284
Normal
0.0
493
Tumor
0.0
861
Tumor
0.0
852
Normal
0.0
916
Normal
0.0
755
Tumor
0.0
223
Tumor
0.0
113
Tumor
0.0
1028
Normal
0.0
443
Tumor
0.0
558
Normal
0.0
145
Tumor
0.0
913
Tumor
0.0
261
Tumor
0.0
743
Tumor
0.0
161
Tumor
0.0
554
Normal
0.0
884
Normal
0.0
1042
Normal
0.0
112
Tumor
0.0
557
Tumor
0.0
395
Tumor
0.0
455
Tumor
0.0
271
Tumor
0.0
445
Tumor
0.0
147
Tumor
0.0
494
Normal
0.0
357
Tumor
0.0
393
Tumor
0.0
917
Tumor
0.0
514
Normal
0.0
297
Tumor
0.0
697
Tumor
0.0
918
Normal
0.0
572
Normal
0.0
574
Normal
0.0
1045
Tumor
0.0
277
Tumor
-0.1
361
Tumor
-0.1
695
Tumor
-0.1
536
Normal
-0.1
467
Tumor
-0.1
141
Tumor
-0.1
724
Normal
-0.1
484
Normal
-0.1
465
Tumor
-0.1
526
Normal
-0.1
533
Tumor
-0.1
922
Normal
-0.1
311
Tumor
-0.1
977
Tumor
-0.1
415
Tumor
-0.1
1015
Tumor
-0.1
867
Tumor
-0.1
877
Tumor
-0.1
715
Tumor
-0.1
492
Normal
-0.1
685
Tumor
-0.1
881
Tumor
-0.1
696
Normal
-0.1
617
Tumor
-0.1
171
Tumor
-0.1
1021
Tumor
-0.1
327
Tumor
-0.1
671
Tumor
-0.1
627
Tumor
-0.1
814
Normal
-0.1
125
Tumor
-0.1
911
Tumor
-0.1
471
Tumor
-0.2
191
Tumor
-0.2
963
Tumor
-0.2
777
Tumor
-0.2
185
Tumor
-0.2
135
Tumor
-0.2
451
Tumor
-0.2
1027
Tumor
-0.2
524
Normal
-0.2
527
Tumor
-0.2
447
Tumor
-0.2
615
Tumor
-0.2
433
Tumor
-0.2
713
Tumor
-0.2
515
Tumor
-0.2
665
Tumor
-0.2
131
Tumor
-0.2
1041
Tumor
-0.2
411
Tumor
-0.2
813
Tumor
-0.2
553
Tumor
-0.2
187
Tumor
-0.2
1013
Tumor
-0.2
863
Tumor
-0.2
817
Tumor
-0.2
873
Tumor
-0.2
983
Tumor
-0.2
857
Tumor
-0.2
965
Tumor
-0.2
283
Tumor
-0.3
721
Tumor
-0.3
563
Tumor
-0.3
865
Tumor
-0.3
375
Tumor
-0.3
477
Tumor
-0.3
823
Tumor
-0.3
567
Tumor
-0.3
213
Tumor
-0.3
951
Tumor
-0.3
915
Tumor
-0.3
385
Tumor
-0.3
421
Tumor
-0.3
127
Tumor
-0.3
383
Tumor
-0.3
537
Tumor
-0.3
937
Tumor
-0.4
1031
Tumor
-0.4
635
Tumor
-0.4
663
Tumor
-0.4
355
Tumor
-0.4
331
Tumor
-0.4
285
Tumor
-0.4
351
Tumor
-0.4
943
Tumor
-0.4
525
Tumor
-0.4
815
Tumor
-0.4
1025
Tumor
-0.4
573
Tumor
-0.5
387
Tumor
-0.5
491
Tumor
-0.5
851
Tumor
-0.5
953
Tumor
-0.5
517
Tumor
-0.5
647
Tumor
-0.5
341
Tumor
-0.5
211
Tumor
-0.5
257
Tumor
-0.5
367
Tumor
-0.5
883
Tumor
-0.6
975
Tumor
-0.6
921
Tumor
-0.6
473
Tumor
-0.6
925
Tumor
-0.6
535
Tumor
-0.6
523
Tumor
-0.7
957
Tumor
-0.7
313
Tumor
-0.7
427
Tumor
-0.7
497
Tumor
-0.8
483
Tumor
-0.8
487
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.