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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
0.9
533
Tumor
0.9
615
Tumor
0.9
865
Tumor
0.8
431
Tumor
0.8
981
Tumor
0.7
192
Normal
0.7
465
Tumor
0.7
331
Tumor
0.7
435
Tumor
0.7
313
Tumor
0.7
364
Normal
0.6
341
Tumor
0.6
221
Tumor
0.6
965
Tumor
0.6
463
Tumor
0.6
363
Tumor
0.6
452
Normal
0.6
472
Normal
0.6
745
Tumor
0.5
468
Normal
0.5
1041
Tumor
0.5
491
Tumor
0.5
412
Normal
0.5
813
Tumor
0.5
444
Normal
0.5
474
Normal
0.5
861
Tumor
0.5
451
Tumor
0.5
351
Tumor
0.5
1013
Tumor
0.5
127
Tumor
0.5
456
Normal
0.5
647
Tumor
0.5
222
Normal
0.5
353
Tumor
0.5
433
Tumor
0.4
218
Normal
0.4
123
Tumor
0.4
413
Tumor
0.4
131
Tumor
0.4
217
Tumor
0.4
671
Tumor
0.4
446
Normal
0.4
426
Normal
0.4
434
Normal
0.4
445
Tumor
0.4
665
Tumor
0.4
285
Tumor
0.4
428
Normal
0.4
482
Normal
0.4
1031
Tumor
0.4
267
Tumor
0.4
513
Tumor
0.4
467
Tumor
0.4
427
Tumor
0.4
1026
Normal
0.4
627
Tumor
0.4
628
Normal
0.4
462
Normal
0.4
195
Tumor
0.4
414
Normal
0.4
464
Normal
0.4
423
Tumor
0.4
573
Tumor
0.4
967
Tumor
0.4
1043
Tumor
0.4
944
Normal
0.4
724
Normal
0.4
161
Tumor
0.3
911
Tumor
0.3
478
Normal
0.3
466
Normal
0.3
191
Tumor
0.3
141
Tumor
0.3
741
Tumor
0.3
327
Tumor
0.3
422
Normal
0.3
715
Tumor
0.3
211
Tumor
0.3
616
Normal
0.3
864
Normal
0.3
1015
Tumor
0.3
395
Tumor
0.3
415
Tumor
0.3
271
Tumor
0.3
436
Normal
0.3
636
Normal
0.3
641
Tumor
0.3
261
Tumor
0.3
365
Tumor
0.3
297
Tumor
0.3
672
Normal
0.3
737
Tumor
0.3
743
Tumor
0.3
196
Normal
0.3
142
Normal
0.3
481
Tumor
0.3
214
Normal
0.3
661
Tumor
0.3
332
Normal
0.3
666
Normal
0.3
881
Tumor
0.3
432
Normal
0.3
1032
Normal
0.3
618
Normal
0.3
277
Tumor
0.3
943
Tumor
0.3
523
Tumor
0.3
536
Normal
0.3
314
Normal
0.3
963
Tumor
0.3
567
Tumor
0.3
557
Tumor
0.3
695
Tumor
0.3
554
Normal
0.2
145
Tumor
0.2
785
Tumor
0.2
1022
Normal
0.2
883
Tumor
0.2
568
Normal
0.2
685
Tumor
0.2
535
Tumor
0.2
357
Tumor
0.2
147
Tumor
0.2
574
Normal
0.2
1028
Normal
0.2
136
Normal
0.2
553
Tumor
0.2
572
Normal
0.2
494
Normal
0.2
983
Tumor
0.2
312
Normal
0.2
411
Tumor
0.2
421
Tumor
0.2
213
Tumor
0.2
564
Normal
0.2
956
Normal
0.2
966
Normal
0.2
171
Tumor
0.2
455
Tumor
0.2
484
Normal
0.2
617
Tumor
0.2
814
Normal
0.2
311
Tumor
0.2
528
Normal
0.2
298
Normal
0.2
545
Tumor
0.2
187
Tumor
0.2
262
Normal
0.2
416
Normal
0.2
977
Tumor
0.2
424
Normal
0.2
662
Normal
0.2
723
Tumor
0.1
648
Normal
0.1
742
Normal
0.1
492
Normal
0.1
873
Tumor
0.1
546
Normal
0.1
231
Tumor
0.1
558
Normal
0.1
278
Normal
0.1
728
Normal
0.1
777
Tumor
0.1
755
Tumor
0.1
858
Normal
0.1
1045
Tumor
0.1
111
Normal
0.1
642
Normal
0.1
976
Normal
0.1
958
Normal
0.1
132
Normal
0.1
366
Normal
0.1
488
Normal
0.1
968
Normal
0.1
925
Tumor
0.1
361
Tumor
0.1
866
Normal
0.1
393
Tumor
0.1
114
Normal
0.1
862
Normal
0.1
344
Normal
0.1
722
Normal
0.1
955
Tumor
0.1
686
Normal
0.1
224
Normal
0.1
376
Normal
0.1
984
Normal
0.1
537
Tumor
0.1
696
Normal
0.1
138
Normal
0.1
727
Tumor
0.1
383
Tumor
0.1
232
Normal
0.1
975
Tumor
0.1
443
Tumor
0.1
125
Tumor
0.1
954
Normal
0.1
1046
Normal
0.1
355
Tumor
0.1
524
Normal
0.1
964
Normal
0.1
514
Normal
0.1
1042
Normal
0.0
664
Normal
0.0
957
Tumor
0.0
744
Normal
0.0
563
Tumor
0.0
952
Normal
0.0
128
Normal
0.0
1025
Tumor
0.0
286
Normal
0.0
146
Normal
0.0
113
Tumor
0.0
447
Tumor
0.0
362
Normal
0.0
328
Normal
0.0
663
Tumor
0.0
538
Normal
0.0
756
Normal
0.0
283
Tumor
0.0
212
Normal
0.0
526
Normal
0.0
461
Tumor
0.0
148
Normal
0.0
272
Normal
0.0
1016
Normal
0.0
867
Tumor
0.0
938
Normal
0.0
534
Normal
0.0
978
Normal
0.0
1014
Normal
0.0
375
Tumor
0.0
698
Normal
0.0
188
Normal
0.0
384
Normal
0.0
714
Normal
0.0
917
Tumor
0.0
818
Normal
0.0
716
Normal
0.0
516
Normal
0.0
498
Normal
0.0
227
Tumor
0.0
284
Normal
0.0
868
Normal
0.0
343
Tumor
0.0
258
Normal
0.0
268
Normal
0.0
738
Normal
0.0
386
Normal
0.0
228
Normal
0.0
878
Normal
0.0
778
Normal
-0.1
874
Normal
-0.1
367
Tumor
-0.1
982
Normal
-0.1
354
Normal
-0.1
391
Tumor
-0.1
697
Tumor
-0.1
746
Normal
-0.1
425
Tumor
-0.1
352
Normal
-0.1
186
Normal
-0.1
396
Normal
-0.1
126
Normal
-0.1
953
Tumor
-0.1
786
Normal
-0.1
571
Tumor
-0.1
477
Tumor
-0.1
1044
Normal
-0.1
824
Normal
-0.1
137
Tumor
-0.1
518
Normal
-0.1
1027
Tumor
-0.1
914
Normal
-0.1
394
Normal
-0.1
385
Tumor
-0.1
1021
Tumor
-0.1
483
Tumor
-0.1
392
Normal
-0.1
185
Tumor
-0.1
112
Tumor
-0.2
721
Tumor
-0.2
223
Tumor
-0.2
162
Normal
-0.2
471
Tumor
-0.2
493
Tumor
-0.2
913
Tumor
-0.2
172
Normal
-0.2
882
Normal
-0.2
497
Tumor
-0.2
358
Normal
-0.2
515
Tumor
-0.2
823
Tumor
-0.2
527
Tumor
-0.2
124
Normal
-0.2
815
Tumor
-0.2
918
Normal
-0.2
635
Tumor
-0.2
356
Normal
-0.2
924
Normal
-0.2
877
Tumor
-0.2
916
Normal
-0.3
525
Tumor
-0.3
368
Normal
-0.3
388
Normal
-0.3
951
Tumor
-0.3
342
Normal
-0.3
922
Normal
-0.3
926
Normal
-0.3
915
Tumor
-0.3
816
Normal
-0.3
852
Normal
-0.4
135
Tumor
-0.4
257
Tumor
-0.4
923
Tumor
-0.4
473
Tumor
-0.4
863
Tumor
-0.4
448
Normal
-0.4
517
Tumor
-0.4
857
Tumor
-0.4
817
Tumor
-0.4
487
Tumor
-0.4
912
Normal
-0.4
884
Normal
-0.4
713
Tumor
-0.5
851
Tumor
-0.5
387
Tumor
-0.5
921
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
