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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLVAP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
926.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
233.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
227.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
208.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
195.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
186.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
177.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
173.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
167.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
156.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
156.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
151.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
143.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
139.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
128.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
128.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
122.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
121.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
121.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
119.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
116.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
113.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
111.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
110.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
110.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
109.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
109.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
108.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
105.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
104.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
102.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
100.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
99.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
98.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
96.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
95.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
94.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
94.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
94.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
93.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
93.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
93.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
93.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
92.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
91.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
91.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
90.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
90.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
87.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
85.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
85.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
83.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
83.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
83.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
82.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
80.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
80.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
79.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
78.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
78.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
77.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
77.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
77.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
77.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
76.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
75.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
75.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
75.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
75.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
74.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
74.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
74.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
73.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
72.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
71.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
71.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
70.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
70.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
70.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
70.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
70.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
69.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
69.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
69.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
68.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
67.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
67.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
66.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
66.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
66.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
65.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
63.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
63.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
62.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
62.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
62.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
61.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
61.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
60.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
60.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
60.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
60.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
59.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
59.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
58.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
58.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
58.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
56.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
56.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
55.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
55.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
54.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
54.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
52.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
51.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
51.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
50.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
49.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
48.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
48.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
45.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
44.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
39.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLVAP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.3
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
278.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
158.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
156.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
152.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
138.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
132.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
123.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
115.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
109.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
101.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
93.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
89.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
87.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
86.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
85.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
74.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
71.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
71.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
68.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
67.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
66.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
66.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
62.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
59.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
59.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
58.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
57.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
57.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
57.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
56.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
56.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
55.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
55.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
52.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
52.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
51.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
51.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
50.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
46.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
46.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
44.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
43.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
41.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
38.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
2.2
915
Tumor
1.9
327
Tumor
1.8
981
Tumor
1.6
647
Tumor
1.6
261
Tumor
1.5
363
Tumor
1.5
353
Tumor
1.4
1025
Tumor
1.4
1031
Tumor
1.4
727
Tumor
1.4
553
Tumor
1.4
911
Tumor
1.4
695
Tumor
1.4
937
Tumor
1.3
1043
Tumor
1.2
465
Tumor
1.2
1015
Tumor
1.2
627
Tumor
1.2
777
Tumor
1.2
227
Tumor
1.2
977
Tumor
1.2
467
Tumor
1.2
473
Tumor
1.1
715
Tumor
1.1
615
Tumor
1.1
1041
Tumor
1.0
461
Tumor
1.0
965
Tumor
1.0
923
Tumor
1.0
861
Tumor
1.0
713
Tumor
1.0
957
Tumor
0.9
141
Tumor
0.9
223
Tumor
0.9
557
Tumor
0.9
411
Tumor
0.9
221
Tumor
0.9
483
Tumor
0.9
171
Tumor
0.9
477
Tumor
0.8
745
Tumor
0.8
187
Tumor
0.8
975
Tumor
0.8
341
Tumor
0.8
1045
Tumor
0.8
192
Normal
0.8
471
Tumor
0.8
123
Tumor
0.8
913
Tumor
0.7
785
Tumor
0.7
113
Tumor
0.7
195
Tumor
0.7
191
Tumor
0.7
545
Tumor
0.7
925
Tumor
0.7
755
Tumor
0.7
617
Tumor
0.7
435
Tumor
0.6
423
Tumor
0.6
525
Tumor
0.6
127
Tumor
0.6
741
Tumor
0.6
433
Tumor
0.6
665
Tumor
0.6
493
Tumor
0.6
571
Tumor
0.6
361
Tumor
0.6
383
Tumor
0.6
823
Tumor
0.6
963
Tumor
0.6
451
Tumor
0.6
231
Tumor
0.6
365
Tumor
0.6
137
Tumor
0.5
743
Tumor
0.5
431
Tumor
0.5
1013
Tumor
0.5
491
Tumor
0.5
863
Tumor
0.5
112
Tumor
0.5
355
Tumor
0.5
535
Tumor
0.4
724
Normal
0.4
515
Tumor
0.4
213
Tumor
0.4
857
Tumor
0.4
161
Tumor
0.4
685
Tumor
0.4
393
Tumor
0.4
533
Tumor
0.4
147
Tumor
0.4
185
Tumor
0.4
921
Tumor
0.3
697
Tumor
0.3
395
Tumor
0.3
421
Tumor
0.3
873
Tumor
0.3
817
Tumor
0.3
851
Tumor
0.3
737
Tumor
0.3
481
Tumor
0.3
277
Tumor
0.3
967
Tumor
0.3
517
Tumor
0.3
413
Tumor
0.3
635
Tumor
0.2
867
Tumor
0.2
462
Normal
0.2
487
Tumor
0.2
447
Tumor
0.2
641
Tumor
0.2
415
Tumor
0.2
343
Tumor
0.2
367
Tumor
0.1
563
Tumor
0.1
145
Tumor
0.1
497
Tumor
0.1
131
Tumor
0.1
357
Tumor
0.1
463
Tumor
0.1
814
Normal
0.1
331
Tumor
0.1
883
Tumor
0.1
445
Tumor
0.1
953
Tumor
0.0
297
Tumor
0.0
257
Tumor
0.0
455
Tumor
0.0
881
Tumor
0.0
537
Tumor
0.0
943
Tumor
0.0
573
Tumor
0.0
267
Tumor
0.0
813
Tumor
0.0
671
Tumor
0.0
271
Tumor
0.0
527
Tumor
-0.1
425
Tumor
-0.1
443
Tumor
-0.1
492
Normal
-0.1
1021
Tumor
-0.1
951
Tumor
-0.1
567
Tumor
-0.1
721
Tumor
-0.1
188
Normal
-0.1
1027
Tumor
-0.1
427
Tumor
-0.1
523
Tumor
-0.1
982
Normal
-0.1
983
Tumor
-0.2
917
Tumor
-0.2
354
Normal
-0.2
217
Tumor
-0.2
364
Normal
-0.2
384
Normal
-0.2
865
Tumor
-0.2
444
Normal
-0.2
313
Tumor
-0.2
135
Tumor
-0.2
391
Tumor
-0.2
387
Tumor
-0.2
536
Normal
-0.2
285
Tumor
-0.3
916
Normal
-0.3
311
Tumor
-0.3
984
Normal
-0.3
284
Normal
-0.3
392
Normal
-0.3
874
Normal
-0.3
434
Normal
-0.3
546
Normal
-0.3
146
Normal
-0.3
478
Normal
-0.4
1016
Normal
-0.4
574
Normal
-0.4
663
Tumor
-0.4
558
Normal
-0.4
211
Tumor
-0.4
385
Tumor
-0.4
498
Normal
-0.4
516
Normal
-0.4
386
Normal
-0.4
534
Normal
-0.4
554
Normal
-0.4
918
Normal
-0.4
268
Normal
-0.4
815
Tumor
-0.4
224
Normal
-0.4
756
Normal
-0.4
528
Normal
-0.4
958
Normal
-0.4
283
Tumor
-0.4
572
Normal
-0.4
524
Normal
-0.4
636
Normal
-0.4
1014
Normal
-0.5
661
Tumor
-0.5
978
Normal
-0.5
416
Normal
-0.5
877
Tumor
-0.5
351
Tumor
-0.5
538
Normal
-0.5
884
Normal
-0.5
446
Normal
-0.5
474
Normal
-0.5
394
Normal
-0.5
412
Normal
-0.5
228
Normal
-0.5
472
Normal
-0.5
976
Normal
-0.5
358
Normal
-0.5
125
Tumor
-0.5
1032
Normal
-0.5
375
Tumor
-0.5
526
Normal
-0.6
816
Normal
-0.6
424
Normal
-0.6
436
Normal
-0.6
818
Normal
-0.6
352
Normal
-0.6
466
Normal
-0.6
882
Normal
-0.6
218
Normal
-0.6
328
Normal
-0.6
344
Normal
-0.6
786
Normal
-0.6
514
Normal
-0.6
922
Normal
-0.6
914
Normal
-0.6
672
Normal
-0.6
852
Normal
-0.6
1026
Normal
-0.6
778
Normal
-0.6
114
Normal
-0.7
864
Normal
-0.7
956
Normal
-0.7
432
Normal
-0.7
926
Normal
-0.7
968
Normal
-0.7
488
Normal
-0.7
356
Normal
-0.7
666
Normal
-0.7
124
Normal
-0.7
278
Normal
-0.7
426
Normal
-0.7
376
Normal
-0.7
414
Normal
-0.7
662
Normal
-0.7
716
Normal
-0.7
722
Normal
-0.7
422
Normal
-0.7
568
Normal
-0.7
126
Normal
-0.7
138
Normal
-0.7
924
Normal
-0.7
368
Normal
-0.7
912
Normal
-0.8
878
Normal
-0.8
468
Normal
-0.8
484
Normal
-0.8
518
Normal
-0.8
944
Normal
-0.8
964
Normal
-0.8
262
Normal
-0.8
428
Normal
-0.8
664
Normal
-0.8
366
Normal
-0.8
142
Normal
-0.8
1028
Normal
-0.8
214
Normal
-0.8
448
Normal
-0.8
222
Normal
-0.8
1044
Normal
-0.8
1022
Normal
-0.8
1042
Normal
-0.8
342
Normal
-0.8
728
Normal
-0.8
862
Normal
-0.8
866
Normal
-0.8
312
Normal
-0.8
456
Normal
-0.8
1046
Normal
-0.9
332
Normal
-0.9
628
Normal
-0.9
212
Normal
-0.9
148
Normal
-0.9
952
Normal
-0.9
132
Normal
-0.9
954
Normal
-0.9
464
Normal
-0.9
746
Normal
-0.9
696
Normal
-0.9
232
Normal
-0.9
162
Normal
-0.9
136
Normal
-0.9
564
Normal
-0.9
938
Normal
-0.9
742
Normal
-0.9
396
Normal
-0.9
258
Normal
-0.9
452
Normal
-0.9
714
Normal
-0.9
868
Normal
-0.9
172
Normal
-0.9
362
Normal
-1.0
858
Normal
-1.0
286
Normal
-1.0
698
Normal
-1.0
494
Normal
-1.0
186
Normal
-1.0
111
Normal
-1.0
966
Normal
-1.0
314
Normal
-1.0
482
Normal
-1.0
618
Normal
-1.0
642
Normal
-1.0
128
Normal
-1.0
196
Normal
-1.0
272
Normal
-1.0
686
Normal
-1.0
388
Normal
-1.0
298
Normal
-1.1
738
Normal
-1.1
824
Normal
-1.2
723
Tumor
-1.2
616
Normal
-1.2
955
Tumor
-1.2
744
Normal
-1.3
648
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.