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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DOHH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DOHH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.8
395
Tumor
0.8
267
Tumor
0.8
724
Normal
0.7
413
Tumor
0.7
697
Tumor
0.6
665
Tumor
0.6
312
Normal
0.6
1015
Tumor
0.6
113
Tumor
0.6
393
Tumor
0.6
465
Tumor
0.6
211
Tumor
0.6
451
Tumor
0.6
545
Tumor
0.6
331
Tumor
0.5
535
Tumor
0.5
283
Tumor
0.5
353
Tumor
0.5
278
Normal
0.5
297
Tumor
0.4
913
Tumor
0.4
124
Normal
0.4
358
Normal
0.4
195
Tumor
0.4
785
Tumor
0.4
663
Tumor
0.4
351
Tumor
0.4
268
Normal
0.4
976
Normal
0.4
128
Normal
0.4
145
Tumor
0.4
357
Tumor
0.4
755
Tumor
0.4
452
Normal
0.4
298
Normal
0.4
314
Normal
0.3
756
Normal
0.3
966
Normal
0.3
482
Normal
0.3
981
Tumor
0.3
114
Normal
0.3
354
Normal
0.3
487
Tumor
0.3
926
Normal
0.3
342
Normal
0.3
416
Normal
0.3
125
Tumor
0.3
123
Tumor
0.3
367
Tumor
0.3
223
Tumor
0.3
557
Tumor
0.3
627
Tumor
0.3
1016
Normal
0.3
394
Normal
0.3
937
Tumor
0.3
516
Normal
0.3
858
Normal
0.3
467
Tumor
0.3
262
Normal
0.3
424
Normal
0.2
127
Tumor
0.2
468
Normal
0.2
642
Normal
0.2
231
Tumor
0.2
648
Normal
0.2
136
Normal
0.2
332
Normal
0.2
615
Tumor
0.2
481
Tumor
0.2
525
Tumor
0.2
171
Tumor
0.2
172
Normal
0.2
978
Normal
0.2
484
Normal
0.2
462
Normal
0.2
376
Normal
0.2
277
Tumor
0.2
221
Tumor
0.2
881
Tumor
0.2
526
Normal
0.2
851
Tumor
0.2
148
Normal
0.2
955
Tumor
0.2
368
Normal
0.2
662
Normal
0.2
126
Normal
0.2
111
Normal
0.2
112
Tumor
0.2
967
Tumor
0.2
344
Normal
0.2
874
Normal
0.2
258
Normal
0.2
214
Normal
0.2
488
Normal
0.2
546
Normal
0.2
696
Normal
0.2
515
Tumor
0.2
286
Normal
0.2
956
Normal
0.2
914
Normal
0.2
422
Normal
0.1
464
Normal
0.1
518
Normal
0.1
524
Normal
0.1
738
Normal
0.1
647
Tumor
0.1
428
Normal
0.1
217
Tumor
0.1
786
Normal
0.1
728
Normal
0.1
313
Tumor
0.1
147
Tumor
0.1
514
Normal
0.1
466
Normal
0.1
261
Tumor
0.1
414
Normal
0.1
232
Normal
0.1
982
Normal
0.1
953
Tumor
0.1
271
Tumor
0.1
722
Normal
0.1
352
Normal
0.1
723
Tumor
0.1
964
Normal
0.1
714
Normal
0.1
387
Tumor
0.1
472
Normal
0.1
162
Normal
0.1
618
Normal
0.1
222
Normal
0.1
666
Normal
0.1
554
Normal
0.1
228
Normal
0.1
188
Normal
0.1
857
Tumor
0.1
513
Tumor
0.1
366
Normal
0.1
815
Tumor
0.1
1042
Normal
0.1
498
Normal
0.1
386
Normal
0.1
396
Normal
0.1
341
Tumor
0.1
196
Normal
0.1
944
Normal
0.1
356
Normal
0.1
865
Tumor
0.1
224
Normal
0.1
192
Normal
0.1
534
Normal
0.1
925
Tumor
0.1
564
Normal
0.0
474
Normal
0.0
391
Tumor
0.0
456
Normal
0.0
698
Normal
0.0
138
Normal
0.0
186
Normal
0.0
492
Normal
0.0
132
Normal
0.0
852
Normal
0.0
664
Normal
0.0
491
Tumor
0.0
695
Tumor
0.0
912
Normal
0.0
977
Tumor
0.0
365
Tumor
0.0
917
Tumor
0.0
447
Tumor
0.0
814
Normal
0.0
384
Normal
0.0
923
Tumor
0.0
915
Tumor
0.0
141
Tumor
0.0
432
Normal
0.0
721
Tumor
0.0
1013
Tumor
0.0
478
Normal
0.0
1026
Normal
0.0
778
Normal
0.0
922
Normal
0.0
327
Tumor
0.0
864
Normal
0.0
483
Tumor
0.0
212
Normal
0.0
918
Normal
0.0
984
Normal
0.0
362
Normal
0.0
1014
Normal
0.0
911
Tumor
0.0
446
Normal
0.0
311
Tumor
0.0
426
Normal
0.0
824
Normal
0.0
497
Tumor
0.0
968
Normal
0.0
427
Tumor
0.0
443
Tumor
0.0
862
Normal
0.0
883
Tumor
0.0
965
Tumor
0.0
866
Normal
0.0
563
Tumor
0.0
877
Tumor
0.0
436
Normal
0.0
1032
Normal
0.0
636
Normal
0.0
383
Tumor
0.0
388
Normal
0.0
537
Tumor
0.0
868
Normal
0.0
536
Normal
0.0
867
Tumor
-0.1
818
Normal
-0.1
672
Normal
-0.1
746
Normal
-0.1
463
Tumor
-0.1
823
Tumor
-0.1
392
Normal
-0.1
191
Tumor
-0.1
494
Normal
-0.1
213
Tumor
-0.1
943
Tumor
-0.1
938
Normal
-0.1
568
Normal
-0.1
146
Normal
-0.1
685
Tumor
-0.1
412
Normal
-0.1
433
Tumor
-0.1
1041
Tumor
-0.1
716
Normal
-0.1
135
Tumor
-0.1
361
Tumor
-0.1
916
Normal
-0.1
434
Normal
-0.1
553
Tumor
-0.1
218
Normal
-0.1
423
Tumor
-0.1
375
Tumor
-0.1
963
Tumor
-0.1
473
Tumor
-0.1
924
Normal
-0.1
284
Normal
-0.1
686
Normal
-0.1
873
Tumor
-0.1
713
Tumor
-0.1
983
Tumor
-0.1
421
Tumor
-0.1
816
Normal
-0.1
777
Tumor
-0.1
385
Tumor
-0.1
493
Tumor
-0.1
523
Tumor
-0.1
187
Tumor
-0.1
741
Tumor
-0.1
415
Tumor
-0.1
863
Tumor
-0.1
882
Normal
-0.1
355
Tumor
-0.1
661
Tumor
-0.1
617
Tumor
-0.2
641
Tumor
-0.2
1025
Tumor
-0.2
461
Tumor
-0.2
742
Normal
-0.2
1028
Normal
-0.2
455
Tumor
-0.2
861
Tumor
-0.2
533
Tumor
-0.2
137
Tumor
-0.2
1031
Tumor
-0.2
538
Normal
-0.2
958
Normal
-0.2
628
Normal
-0.2
567
Tumor
-0.2
185
Tumor
-0.2
572
Normal
-0.2
448
Normal
-0.2
616
Normal
-0.2
817
Tumor
-0.2
884
Normal
-0.2
744
Normal
-0.2
445
Tumor
-0.2
671
Tumor
-0.2
328
Normal
-0.2
444
Normal
-0.2
364
Normal
-0.2
1046
Normal
-0.2
727
Tumor
-0.2
954
Normal
-0.2
952
Normal
-0.2
272
Normal
-0.3
574
Normal
-0.3
737
Tumor
-0.3
161
Tumor
-0.3
1045
Tumor
-0.3
431
Tumor
-0.3
558
Normal
-0.3
528
Normal
-0.3
878
Normal
-0.3
227
Tumor
-0.3
975
Tumor
-0.3
477
Tumor
-0.3
471
Tumor
-0.3
957
Tumor
-0.3
921
Tumor
-0.3
527
Tumor
-0.3
343
Tumor
-0.3
142
Normal
-0.4
435
Tumor
-0.4
573
Tumor
-0.4
813
Tumor
-0.4
131
Tumor
-0.4
1022
Normal
-0.4
1044
Normal
-0.4
635
Tumor
-0.4
715
Tumor
-0.4
425
Tumor
-0.4
743
Tumor
-0.4
257
Tumor
-0.5
1043
Tumor
-0.5
411
Tumor
-0.5
745
Tumor
-0.5
951
Tumor
-0.6
363
Tumor
-0.7
571
Tumor
-0.7
517
Tumor
-0.8
1021
Tumor
-0.9
1027
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
