MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:30.4 nTPM
GTEx:29.8 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:16.0 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
2586 Male, age 75, left hemisphere 37.5
2666 Male, age 74, left hemisphere 30.3
2411 Female, age 72, unknown 29.1
2019 Male, age 18, unknown 28.8
2828 Female, age 72, unknown 24.6
1827 Male, age 72, unknown 24.4
1870 Female, age 42, unknown 24.4
1830 Male, age 51, unknown 24.1
1833 Male, age 53, unknown 23.7
2219 Male, age 76, both hemispheres 16.1
Dorsal raphe nucleus
nTPM: 19.7
1828 Male, age 53, unknown 22.0
2750 Male, age 76, both hemispheres 21.9
2298 Female, age 72, unknown 20.1
2047 Male, age 72, unknown 18.8
2016 Female, age 72, unknown 15.6
Inferior colliculus
nTPM: 19.8
1890 Male, age 53, unknown 21.1
1848 Female, age 42, unknown 19.9
2849 Male, age 72, unknown 19.3
2097 Female, age 72, unknown 19.0
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 22.4
1795 Male, age 51, unknown 22.4
2502 Female, age 75, unknown 22.4
1947 Male, age 18, unknown 22.3
Periaquaductal grey, dorsal
nTPM: 15.6
2464 Female, age 72, unknown 19.6
1831 Male, age 72, unknown 16.3
1840 Male, age 53, unknown 15.8
2850 Male, age 76, both hemispheres 10.7
Periaquaductal grey, lateral
nTPM: 14.1
2053 Male, age 18, unknown 15.9
2272 Male, age 74, both hemispheres 13.8
2140 Male, age 76, both hemispheres 12.5
Pretectal area
nTPM: 21.4
2007 Male, age 72, unknown 31.4
1817 Female, age 42, unknown 24.4
1815 Male, age 53, unknown 23.9
1816 Male, age 51, unknown 23.5
1944 Female, age 72, unknown 23.5
2407 Male, age 75, both hemispheres 22.6
2825 Male, age 18, unknown 20.0
2316 Male, age 76, right hemisphere 19.9
2667 Female, age 75, unknown 18.1
2224 Female, age 72, unknown 16.6
2273 Male, age 74, both hemispheres 11.9
Red nucleus
nTPM: 30.4
2588 Male, age 74, left hemisphere 38.1
2725 Female, age 75, unknown 34.5
2785 Male, age 18, unknown 32.4
2503 Female, age 72, unknown 32.1
2227 Male, age 72, unknown 31.3
2769 Male, age 72, unknown 29.6
1821 Female, age 72, unknown 29.3
1904 Male, age 53, unknown 28.7
2823 Male, age 76, right hemisphere 28.3
2584 Male, age 75, left hemisphere 28.0
1865 Male, age 51, unknown 26.3
1954 Female, age 42, unknown 26.0
Substantia nigra
nTPM: 22.2
2583 Male, age 75, right hemisphere 27.5
1916 Female, age 42, unknown 26.3
1889 Female, age 72, unknown 24.3
1851 Male, age 51, unknown 23.9
2665 Male, age 74, both hemispheres 22.8
2409 Female, age 72, unknown 21.2
2590 Female, age 75, unknown 21.2
1941 Male, age 53, unknown 21.1
2699 Male, age 18, unknown 17.8
2241 Male, age 72, unknown 15.6
Superior colliculus
nTPM: 22.6
2664 Male, age 75, both hemispheres 27.3
2668 Female, age 75, unknown 23.5
1796 Male, age 53, unknown 22.8
1895 Male, age 76, right hemisphere 22.8
1913 Female, age 42, unknown 22.7
2587 Male, age 74, left hemisphere 22.1
1995 Male, age 72, unknown 21.9
1839 Male, age 51, unknown 21.7
2261 Male, age 18, unknown 21.3
2087 Female, age 72, unknown 20.2
Ventral tegmental area
nTPM: 20.9
2410 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 23.3
1942 Male, age 51, unknown 21.5
2223 Female, age 72, unknown 19.6
2218 Male, age 76, both hemispheres 18.6
2021 Male, age 53, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 88.9
Min nTPM: 10.7
Std nTPM: 13.6
Median nTPM: 27.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 55.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 52.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 51.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 50.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 48.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 5.3
Sample A Female 10.5
Sample B Female 7.2
Sample C Male 7.1
Sample D Male 5.3
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.0
Sample A Female 8.5
Sample B Female 7.0
Sample C Male 8.9
Sample D Male 8.0
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.5
Sample B Female 6.5
Sample C Male 7.0
Sample D Male 5.5
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.1
Sample A Female 11.6
Sample B Female 7.7
Sample C Male 8.3
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 12.9
Sample A Male 20.8
Sample B Male 12.9
Sample C Female 13.5
Sample D Female 16.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
413812 Antisense, RP_040809_01_F08, Mouse strain C57BL/6J (56 days, male) 5.6

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