MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.5 nTPM
HPA Brain:83.6 nTPM
GTEx:77.5 nTPM
FANTOM5:137.6 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:3.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 83.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.1
2019 Male, age 18, unknown 84.4
2411 Female, age 72, unknown 83.5
1870 Female, age 42, unknown 83.4
1830 Male, age 51, unknown 74.0
1833 Male, age 53, unknown 56.6
2828 Female, age 72, unknown 56.5
2666 Male, age 74, left hemisphere 38.8
2219 Male, age 76, both hemispheres 32.7
2586 Male, age 75, left hemisphere 31.2
1827 Male, age 72, unknown 30.2
Dorsal raphe nucleus
nTPM: 48.6
2750 Male, age 76, both hemispheres 108.5
1828 Male, age 53, unknown 39.8
2016 Female, age 72, unknown 35.9
2047 Male, age 72, unknown 33.8
2298 Female, age 72, unknown 24.8
Inferior colliculus
nTPM: 28.3
1890 Male, age 53, unknown 38.6
1848 Female, age 42, unknown 30.1
2097 Female, age 72, unknown 26.7
2849 Male, age 72, unknown 17.8
Median raphe nucleus
nTPM: 45.4
2220 Male, age 76, midline 45.4
Periaquaductal grey, anterior
nTPM: 33.8
2502 Female, age 75, unknown 35.6
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 16.5
2464 Female, age 72, unknown 26.8
1831 Male, age 72, unknown 23.3
2850 Male, age 76, both hemispheres 9.6
1840 Male, age 53, unknown 6.1
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 43.5
2053 Male, age 18, unknown 22.8
2140 Male, age 76, both hemispheres 13.1
Pretectal area
nTPM: 31.7
2316 Male, age 76, right hemisphere 48.6
2273 Male, age 74, both hemispheres 45.1
1815 Male, age 53, unknown 39.5
2007 Male, age 72, unknown 35.8
2407 Male, age 75, both hemispheres 33.7
1817 Female, age 42, unknown 29.4
2224 Female, age 72, unknown 28.9
2825 Male, age 18, unknown 26.2
2667 Female, age 75, unknown 25.3
1944 Female, age 72, unknown 20.8
1816 Male, age 51, unknown 15.7
Red nucleus
nTPM: 83.6
2785 Male, age 18, unknown 106.2
2227 Male, age 72, unknown 102.7
2769 Male, age 72, unknown 100.6
1904 Male, age 53, unknown 93.1
1865 Male, age 51, unknown 89.1
2823 Male, age 76, right hemisphere 84.9
2503 Female, age 72, unknown 82.2
1821 Female, age 72, unknown 77.7
2584 Male, age 75, left hemisphere 71.9
2588 Male, age 74, left hemisphere 71.1
1954 Female, age 42, unknown 68.1
2725 Female, age 75, unknown 55.7
Substantia nigra
nTPM: 38.1
2590 Female, age 75, unknown 56.1
1851 Male, age 51, unknown 55.6
2583 Male, age 75, right hemisphere 49.2
1889 Female, age 72, unknown 45.0
1941 Male, age 53, unknown 38.1
1916 Female, age 42, unknown 35.4
2409 Female, age 72, unknown 33.4
2699 Male, age 18, unknown 29.7
2241 Male, age 72, unknown 21.8
2665 Male, age 74, both hemispheres 16.6
Superior colliculus
nTPM: 41.3
1913 Female, age 42, unknown 82.7
1995 Male, age 72, unknown 66.4
2587 Male, age 74, left hemisphere 62.3
2668 Female, age 75, unknown 39.1
1839 Male, age 51, unknown 35.6
1796 Male, age 53, unknown 34.8
1895 Male, age 76, right hemisphere 31.8
2261 Male, age 18, unknown 24.4
2087 Female, age 72, unknown 19.9
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 62.4
2223 Female, age 72, unknown 104.2
2410 Female, age 72, unknown 63.6
2021 Male, age 53, unknown 60.4
1942 Male, age 51, unknown 54.2
2218 Male, age 76, both hemispheres 49.2
1915 Female, age 42, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.5
Samples: 139

Max nTPM: 320.5
Min nTPM: 18.1
Std nTPM: 50.2
Median nTPM: 65.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 320.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 311.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 229.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 204.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 182.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 180.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 168.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 163.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 160.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 158.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 156.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.6
FF:10158-103A5 76 years, female 137.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 13.4
Min nTPM: 8.3
Sample A Female 13.4
Sample B Female 8.3
Sample C Male 9.2
Sample D Male 10.7
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 50.8
Min nTPM: 3.3
Sample A Female 50.8
Sample B Female 9.1
Sample C Male 6.2
Sample D Male 3.3
Periaqueductal gray
nTPM: 6.5
Samples: 3

Max nTPM: 7.5
Min nTPM: 5.6
Sample B Female 7.5
Sample C Male 5.6
Sample D Male 6.5
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.8
Sample A Female 9.3
Sample B Female 9.4
Sample C Male 8.5
Sample D Male 7.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.5
Sample A Male 3.8
Sample B Male 3.5
Sample C Female 3.8
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75198136 Antisense, RP_060502_02_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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