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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHBDF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
73.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHBDF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.3
493
Tumor
0.9
125
Tumor
0.8
311
Tumor
0.8
387
Tumor
0.8
573
Tumor
0.7
375
Tumor
0.7
951
Tumor
0.7
671
Tumor
0.7
525
Tumor
0.6
724
Normal
0.6
343
Tumor
0.6
211
Tumor
0.6
267
Tumor
0.6
983
Tumor
0.5
661
Tumor
0.5
492
Normal
0.5
415
Tumor
0.4
1028
Normal
0.4
925
Tumor
0.4
975
Tumor
0.4
1013
Tumor
0.4
213
Tumor
0.4
567
Tumor
0.4
491
Tumor
0.4
283
Tumor
0.4
395
Tumor
0.4
1026
Normal
0.4
123
Tumor
0.4
535
Tumor
0.4
185
Tumor
0.4
917
Tumor
0.3
737
Tumor
0.3
1042
Normal
0.3
1015
Tumor
0.3
1046
Normal
0.3
978
Normal
0.3
617
Tumor
0.3
367
Tumor
0.3
414
Normal
0.3
527
Tumor
0.3
977
Tumor
0.3
524
Normal
0.3
883
Tumor
0.3
393
Tumor
0.3
385
Tumor
0.3
545
Tumor
0.3
357
Tumor
0.3
817
Tumor
0.3
498
Normal
0.3
471
Tumor
0.3
434
Normal
0.3
965
Tumor
0.2
113
Tumor
0.2
423
Tumor
0.2
814
Normal
0.2
1032
Normal
0.2
867
Tumor
0.2
421
Tumor
0.2
536
Normal
0.2
881
Tumor
0.2
953
Tumor
0.2
1025
Tumor
0.2
963
Tumor
0.2
957
Tumor
0.2
884
Normal
0.2
262
Normal
0.2
477
Tumor
0.2
777
Tumor
0.2
861
Tumor
0.2
966
Normal
0.2
424
Normal
0.2
665
Tumor
0.2
217
Tumor
0.2
1044
Normal
0.2
497
Tumor
0.2
537
Tumor
0.2
666
Normal
0.2
412
Normal
0.2
443
Tumor
0.2
1043
Tumor
0.1
478
Normal
0.1
425
Tumor
0.1
1041
Tumor
0.1
297
Tumor
0.1
422
Normal
0.1
815
Tumor
0.1
823
Tumor
0.1
727
Tumor
0.1
461
Tumor
0.1
195
Tumor
0.1
447
Tumor
0.1
483
Tumor
0.1
513
Tumor
0.1
662
Normal
0.1
713
Tumor
0.1
352
Normal
0.1
351
Tumor
0.1
482
Normal
0.1
697
Tumor
0.1
112
Tumor
0.1
862
Normal
0.1
361
Tumor
0.1
147
Tumor
0.1
877
Tumor
0.1
427
Tumor
0.1
868
Normal
0.1
981
Tumor
0.1
635
Tumor
0.1
1031
Tumor
0.1
553
Tumor
0.1
574
Normal
0.1
191
Tumor
0.1
411
Tumor
0.1
964
Normal
0.1
221
Tumor
0.1
858
Normal
0.1
914
Normal
0.1
813
Tumor
0.1
467
Tumor
0.1
672
Normal
0.1
435
Tumor
0.1
218
Normal
0.1
258
Normal
0.1
363
Tumor
0.1
481
Tumor
0.1
272
Normal
0.1
857
Tumor
0.1
472
Normal
0.0
446
Normal
0.0
231
Tumor
0.0
538
Normal
0.0
391
Tumor
0.0
913
Tumor
0.0
141
Tumor
0.0
564
Normal
0.0
911
Tumor
0.0
268
Normal
0.0
473
Tumor
0.0
257
Tumor
0.0
432
Normal
0.0
528
Normal
0.0
223
Tumor
0.0
1014
Normal
0.0
271
Tumor
0.0
685
Tumor
0.0
572
Normal
0.0
648
Normal
0.0
431
Tumor
0.0
312
Normal
0.0
664
Normal
0.0
915
Tumor
0.0
721
Tumor
0.0
426
Normal
0.0
356
Normal
0.0
224
Normal
0.0
383
Tumor
0.0
232
Normal
0.0
738
Normal
0.0
616
Normal
0.0
413
Tumor
0.0
851
Tumor
0.0
331
Tumor
0.0
958
Normal
0.0
227
Tumor
0.0
558
Normal
0.0
468
Normal
0.0
187
Tumor
0.0
745
Tumor
0.0
636
Normal
0.0
523
Tumor
0.0
852
Normal
0.0
546
Normal
0.0
863
Tumor
0.0
286
Normal
0.0
212
Normal
0.0
1021
Tumor
0.0
866
Normal
0.0
328
Normal
0.0
355
Tumor
0.0
728
Normal
0.0
341
Tumor
0.0
778
Normal
0.0
557
Tumor
0.0
433
Tumor
0.0
563
Tumor
0.0
627
Tumor
-0.1
742
Normal
-0.1
365
Tumor
-0.1
882
Normal
-0.1
332
Normal
-0.1
474
Normal
-0.1
1022
Normal
-0.1
976
Normal
-0.1
1016
Normal
-0.1
526
Normal
-0.1
131
Tumor
-0.1
416
Normal
-0.1
923
Tumor
-0.1
428
Normal
-0.1
628
Normal
-0.1
824
Normal
-0.1
137
Tumor
-0.1
344
Normal
-0.1
984
Normal
-0.1
135
Tumor
-0.1
455
Tumor
-0.1
554
Normal
-0.1
285
Tumor
-0.1
663
Tumor
-0.1
912
Normal
-0.1
514
Normal
-0.1
818
Normal
-0.1
518
Normal
-0.1
968
Normal
-0.1
444
Normal
-0.1
465
Tumor
-0.1
364
Normal
-0.1
464
Normal
-0.1
392
Normal
-0.1
741
Tumor
-0.1
568
Normal
-0.1
284
Normal
-0.1
462
Normal
-0.1
723
Tumor
-0.1
386
Normal
-0.1
327
Tumor
-0.1
228
Normal
-0.1
148
Normal
-0.1
874
Normal
-0.1
982
Normal
-0.1
534
Normal
-0.1
188
Normal
-0.2
916
Normal
-0.2
445
Tumor
-0.2
354
Normal
-0.2
641
Tumor
-0.2
515
Tumor
-0.2
956
Normal
-0.2
1027
Tumor
-0.2
376
Normal
-0.2
642
Normal
-0.2
358
Normal
-0.2
722
Normal
-0.2
647
Tumor
-0.2
126
Normal
-0.2
111
Normal
-0.2
261
Tumor
-0.2
786
Normal
-0.2
954
Normal
-0.2
484
Normal
-0.2
452
Normal
-0.2
162
Normal
-0.2
494
Normal
-0.2
314
Normal
-0.2
171
Tumor
-0.2
353
Tumor
-0.2
816
Normal
-0.2
944
Normal
-0.2
456
Normal
-0.2
864
Normal
-0.2
686
Normal
-0.2
714
Normal
-0.2
396
Normal
-0.2
362
Normal
-0.2
943
Tumor
-0.2
368
Normal
-0.2
696
Normal
-0.2
186
Normal
-0.2
448
Normal
-0.2
451
Tumor
-0.2
755
Tumor
-0.2
918
Normal
-0.2
298
Normal
-0.2
878
Normal
-0.2
698
Normal
-0.2
1045
Tumor
-0.2
384
Normal
-0.2
921
Tumor
-0.2
278
Normal
-0.2
926
Normal
-0.3
756
Normal
-0.3
695
Tumor
-0.3
922
Normal
-0.3
715
Tumor
-0.3
172
Normal
-0.3
114
Normal
-0.3
488
Normal
-0.3
487
Tumor
-0.3
618
Normal
-0.3
938
Normal
-0.3
124
Normal
-0.3
463
Tumor
-0.3
192
Normal
-0.3
516
Normal
-0.3
615
Tumor
-0.3
571
Tumor
-0.3
161
Tumor
-0.3
955
Tumor
-0.3
924
Normal
-0.3
127
Tumor
-0.3
466
Normal
-0.3
746
Normal
-0.3
716
Normal
-0.3
873
Tumor
-0.3
342
Normal
-0.3
952
Normal
-0.3
937
Tumor
-0.3
128
Normal
-0.3
394
Normal
-0.3
865
Tumor
-0.4
388
Normal
-0.4
743
Tumor
-0.4
222
Normal
-0.4
517
Tumor
-0.4
136
Normal
-0.4
744
Normal
-0.4
313
Tumor
-0.4
196
Normal
-0.4
277
Tumor
-0.4
138
Normal
-0.4
132
Normal
-0.4
142
Normal
-0.4
967
Tumor
-0.4
214
Normal
-0.4
146
Normal
-0.5
366
Normal
-0.5
785
Tumor
-0.6
436
Normal
-0.6
145
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
