We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDO1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
113.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
572.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
424.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
387.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
375.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
351.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
314.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
302.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
300.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
298.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
297.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
292.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
288.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
276.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
275.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
268.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
265.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
265.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
261.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
260.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
260.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
260.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
257.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
256.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
252.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
242.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
238.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
237.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
237.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
236.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
236.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
234.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
230.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
225.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
225.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
225.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
223.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
222.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
220.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
219.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
219.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
216.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
214.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
213.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
213.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
210.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
210.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
209.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
208.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
203.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
201.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
200.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
199.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
198.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
195.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
194.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
193.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
192.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
192.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
191.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
190.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
189.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
187.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
186.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
184.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
184.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
184.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
183.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
181.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
180.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
179.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
179.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
178.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
176.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
176.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
176.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
175.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
175.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
174.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
173.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
172.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
171.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
171.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
167.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
167.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
165.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
165.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
165.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
163.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
162.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
160.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
160.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
160.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
159.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
159.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
158.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
157.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
156.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
155.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
154.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
153.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
152.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
150.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
150.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
150.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
148.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
148.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
146.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
145.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
144.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
144.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
143.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
142.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
141.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
141.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
140.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
139.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
138.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
137.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
137.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
137.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
136.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
134.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
134.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
134.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
134.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
133.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
131.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
131.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
131.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
130.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
130.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
130.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
129.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
129.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
128.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
128.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
128.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
126.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
125.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
125.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
125.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
125.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
123.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
123.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
123.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
121.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
121.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
118.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
118.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
118.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
118.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
117.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
117.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
116.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
116.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
116.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
115.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
115.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
114.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
114.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
112.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
112.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
111.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
110.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
110.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
109.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
109.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
109.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
108.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
107.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
107.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
107.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
106.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
106.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
106.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
106.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
104.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
103.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
103.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
102.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
102.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
101.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
100.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
99.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
98.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
98.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
97.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
97.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
96.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
96.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
96.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
96.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
93.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
93.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
92.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
92.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
91.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
91.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
90.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
90.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
90.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
89.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
88.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
87.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
87.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
87.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
86.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
85.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
85.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
84.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
84.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
82.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
81.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
81.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
80.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
80.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
80.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
79.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
79.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
78.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
78.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
77.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
76.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
75.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
75.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
74.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
72.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
71.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
70.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
70.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
69.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
68.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
68.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
67.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
67.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
66.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
66.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
65.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
64.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
62.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
62.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
60.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
59.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
58.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
56.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
55.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
55.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
54.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
52.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
50.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
49.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
49.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
45.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
45.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
43.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
40.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
38.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDO1 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
132.3
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
543.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
510.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
510.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
507.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
464.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
456.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
424.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
402.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
390.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
355.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
341.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
334.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
312.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
304.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
298.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
294.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
288.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
287.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
286.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
285.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
279.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
279.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
278.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
270.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
266.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
263.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
262.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
261.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
260.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
260.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
255.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
255.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
250.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
248.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
244.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
243.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
242.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
241.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
235.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
235.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
231.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
231.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
230.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
229.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
223.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
217.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
207.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
207.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
203.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
200.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
196.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
195.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
195.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
193.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
192.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
189.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
189.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
188.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
187.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
186.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
181.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
181.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
179.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
177.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
171.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
170.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
169.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
168.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
168.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
167.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
167.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
166.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
165.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
163.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
161.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
161.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
160.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
155.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
155.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
153.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
152.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
151.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
149.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
147.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
147.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
146.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
145.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
143.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
143.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
141.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
140.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
140.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
140.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
139.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
137.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
137.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
136.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
134.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
134.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
133.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
132.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
131.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
131.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
131.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
129.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
128.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
127.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
127.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
125.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
121.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
120.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
118.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
118.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
118.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
116.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
114.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
113.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
110.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
109.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
108.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
106.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
106.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
106.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
105.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
104.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
104.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
98.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
97.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
95.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
92.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
91.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
90.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
90.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
89.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
88.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
87.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
86.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
85.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
85.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
84.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
83.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
81.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
81.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
80.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
79.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
79.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
78.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
78.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
76.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
74.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
72.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
71.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
71.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
70.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
69.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
68.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
68.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
66.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
64.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
62.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
60.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
55.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
648
Normal
1.5
114
Normal
1.4
518
Normal
1.3
113
Tumor
1.3
111
Normal
1.3
228
Normal
1.3
1022
Normal
1.3
218
Normal
1.2
743
Tumor
1.2
722
Normal
1.2
714
Normal
1.2
862
Normal
1.1
188
Normal
1.1
696
Normal
1.1
662
Normal
1.1
436
Normal
1.1
666
Normal
1.1
616
Normal
1.1
451
Tumor
1.1
514
Normal
1.1
966
Normal
1.1
366
Normal
1.0
742
Normal
1.0
1042
Normal
1.0
642
Normal
1.0
628
Normal
1.0
214
Normal
1.0
132
Normal
1.0
212
Normal
1.0
526
Normal
0.9
554
Normal
0.9
944
Normal
0.9
272
Normal
0.9
976
Normal
0.9
1028
Normal
0.9
618
Normal
0.9
816
Normal
0.9
232
Normal
0.9
874
Normal
0.9
824
Normal
0.9
344
Normal
0.9
723
Tumor
0.8
738
Normal
0.8
223
Tumor
0.8
356
Normal
0.8
286
Normal
0.8
484
Normal
0.8
126
Normal
0.8
686
Normal
0.8
866
Normal
0.8
728
Normal
0.8
468
Normal
0.8
136
Normal
0.8
981
Tumor
0.7
448
Normal
0.7
756
Normal
0.7
412
Normal
0.7
298
Normal
0.7
685
Tumor
0.7
636
Normal
0.7
396
Normal
0.7
864
Normal
0.7
432
Normal
0.7
1032
Normal
0.7
172
Normal
0.7
564
Normal
0.7
1044
Normal
0.7
426
Normal
0.7
926
Normal
0.7
262
Normal
0.7
362
Normal
0.7
918
Normal
0.7
1046
Normal
0.7
915
Tumor
0.7
778
Normal
0.6
312
Normal
0.6
1026
Normal
0.6
884
Normal
0.6
528
Normal
0.6
258
Normal
0.6
546
Normal
0.6
472
Normal
0.6
327
Tumor
0.6
698
Normal
0.6
558
Normal
0.6
267
Tumor
0.6
482
Normal
0.6
494
Normal
0.6
428
Normal
0.6
416
Normal
0.6
488
Normal
0.6
424
Normal
0.6
956
Normal
0.6
434
Normal
0.6
328
Normal
0.5
196
Normal
0.5
574
Normal
0.5
474
Normal
0.5
462
Normal
0.5
285
Tumor
0.5
665
Tumor
0.5
958
Normal
0.5
914
Normal
0.5
342
Normal
0.5
664
Normal
0.5
882
Normal
0.5
534
Normal
0.5
456
Normal
0.5
358
Normal
0.5
148
Normal
0.5
968
Normal
0.5
786
Normal
0.5
186
Normal
0.5
498
Normal
0.4
964
Normal
0.4
922
Normal
0.4
162
Normal
0.4
568
Normal
0.4
138
Normal
0.4
924
Normal
0.4
852
Normal
0.4
911
Tumor
0.4
516
Normal
0.4
386
Normal
0.4
376
Normal
0.4
464
Normal
0.4
524
Normal
0.4
916
Normal
0.4
394
Normal
0.4
446
Normal
0.4
364
Normal
0.3
967
Tumor
0.3
314
Normal
0.3
982
Normal
0.3
388
Normal
0.3
1014
Normal
0.3
571
Tumor
0.3
868
Normal
0.3
716
Normal
0.3
572
Normal
0.3
422
Normal
0.3
128
Normal
0.3
284
Normal
0.3
954
Normal
0.3
978
Normal
0.3
861
Tumor
0.2
567
Tumor
0.2
878
Normal
0.2
278
Normal
0.2
858
Normal
0.2
353
Tumor
0.2
818
Normal
0.2
487
Tumor
0.2
746
Normal
0.2
1016
Normal
0.2
341
Tumor
0.2
452
Normal
0.2
146
Normal
0.2
392
Normal
0.1
217
Tumor
0.1
938
Normal
0.1
715
Tumor
0.1
744
Normal
0.1
466
Normal
0.1
952
Normal
0.1
222
Normal
0.1
352
Normal
0.0
1013
Tumor
0.0
368
Normal
0.0
857
Tumor
0.0
955
Tumor
0.0
538
Normal
0.0
411
Tumor
0.0
737
Tumor
0.0
354
Normal
0.0
873
Tumor
0.0
483
Tumor
-0.1
492
Normal
-0.1
815
Tumor
-0.1
984
Normal
-0.1
332
Normal
-0.1
533
Tumor
-0.1
414
Normal
-0.1
912
Normal
-0.1
477
Tumor
-0.1
727
Tumor
-0.1
983
Tumor
-0.1
385
Tumor
-0.1
343
Tumor
-0.2
227
Tumor
-0.2
741
Tumor
-0.2
923
Tumor
-0.2
525
Tumor
-0.2
1031
Tumor
-0.2
867
Tumor
-0.2
268
Normal
-0.2
191
Tumor
-0.2
713
Tumor
-0.2
497
Tumor
-0.2
755
Tumor
-0.2
387
Tumor
-0.2
471
Tumor
-0.3
444
Normal
-0.3
192
Normal
-0.3
977
Tumor
-0.3
925
Tumor
-0.3
672
Normal
-0.3
384
Normal
-0.3
1041
Tumor
-0.3
423
Tumor
-0.3
695
Tumor
-0.3
413
Tumor
-0.3
261
Tumor
-0.4
478
Normal
-0.4
473
Tumor
-0.4
145
Tumor
-0.4
187
Tumor
-0.4
745
Tumor
-0.4
851
Tumor
-0.4
1015
Tumor
-0.4
491
Tumor
-0.4
142
Normal
-0.5
481
Tumor
-0.5
937
Tumor
-0.5
427
Tumor
-0.5
465
Tumor
-0.5
1043
Tumor
-0.5
823
Tumor
-0.5
537
Tumor
-0.6
357
Tumor
-0.6
536
Normal
-0.6
195
Tumor
-0.6
351
Tumor
-0.6
863
Tumor
-0.6
161
Tumor
-0.6
641
Tumor
-0.6
921
Tumor
-0.6
185
Tumor
-0.6
415
Tumor
-0.6
391
Tumor
-0.6
213
Tumor
-0.6
433
Tumor
-0.7
431
Tumor
-0.7
363
Tumor
-0.7
461
Tumor
-0.7
563
Tumor
-0.7
617
Tumor
-0.7
965
Tumor
-0.7
135
Tumor
-0.7
817
Tumor
-0.7
814
Normal
-0.8
883
Tumor
-0.8
877
Tumor
-0.8
517
Tumor
-0.8
721
Tumor
-0.8
393
Tumor
-0.8
447
Tumor
-0.8
361
Tumor
-0.8
963
Tumor
-0.9
493
Tumor
-0.9
627
Tumor
-0.9
913
Tumor
-0.9
917
Tumor
-0.9
443
Tumor
-0.9
224
Normal
-0.9
573
Tumor
-0.9
865
Tumor
-0.9
141
Tumor
-0.9
221
Tumor
-0.9
557
Tumor
-0.9
785
Tumor
-0.9
1027
Tumor
-0.9
435
Tumor
-1.0
515
Tumor
-1.0
661
Tumor
-1.0
367
Tumor
-1.0
1021
Tumor
-1.1
953
Tumor
-1.1
553
Tumor
-1.1
365
Tumor
-1.1
124
Normal
-1.1
395
Tumor
-1.1
355
Tumor
-1.1
1045
Tumor
-1.1
813
Tumor
-1.1
724
Normal
-1.1
777
Tumor
-1.2
513
Tumor
-1.2
535
Tumor
-1.2
171
Tumor
-1.2
147
Tumor
-1.2
137
Tumor
-1.2
975
Tumor
-1.2
943
Tumor
-1.3
331
Tumor
-1.3
127
Tumor
-1.3
951
Tumor
-1.3
383
Tumor
-1.3
445
Tumor
-1.3
1025
Tumor
-1.4
112
Tumor
-1.4
421
Tumor
-1.4
131
Tumor
-1.4
211
Tumor
-1.5
527
Tumor
-1.5
123
Tumor
-1.5
647
Tumor
-1.6
523
Tumor
-1.6
297
Tumor
-1.6
283
Tumor
-1.7
881
Tumor
-1.7
545
Tumor
-1.7
425
Tumor
-1.7
697
Tumor
-1.8
311
Tumor
-1.8
231
Tumor
-1.9
125
Tumor
-1.9
277
Tumor
-1.9
957
Tumor
-1.9
663
Tumor
-1.9
257
Tumor
-2.0
467
Tumor
-2.0
615
Tumor
-2.0
463
Tumor
-2.0
271
Tumor
-2.0
375
Tumor
-2.1
671
Tumor
-2.2
313
Tumor
-2.2
635
Tumor
-2.2
455
Tumor
-3.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.