BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:181.8 nTPM
HPA Brain:138.4 nTPM
GTEx:181.8 nTPM
FANTOM5:187.2 Scaled Tags Per Million
Pig:75.6 nTPM
Mouse:188.4 nTPM
Allen mouse:1.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028882
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 138.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 107.3
2481 Female, age 94, left hemisphere 141.6
2288 Male, age 75, left hemisphere 121.4
2846 Female, age 79, unknown 108.2
1854 Male, age 80, left hemisphere 106.1
1857 Female, age 85, left hemisphere 105.2
2290 Female, age 72, unknown 99.3
2289 Male, age 61, right hemisphere 92.6
1781 Male, age 74, unknown 84.1
Globus pallidus, externus
nTPM: 124.0
1996 Male, age 80, right hemisphere 189.3
2772 Female, age 79, unknown 151.9
2395 Male, age 75, both hemispheres 121.9
2646 Male, age 61, right hemisphere 95.3
2567 Female, age 72, unknown 61.5
Globus pallidus, internus
nTPM: 138.4
2037 Male, age 80, right hemisphere 160.8
2778 Female, age 91, both hemispheres 158.4
1818 Male, age 74, unknown 148.3
2111 Female, age 85, right hemisphere 137.6
2287 Male, age 75, right hemisphere 136.0
2483 Female, age 94, right hemisphere 135.8
2566 Female, age 72, unknown 92.1
Nucleus accumbens
nTPM: 111.1
2391 Female, age 94, left hemisphere 137.1
2286 Male, age 75, left hemisphere 127.5
2698 Female, age 72, unknown 121.4
1806 Female, age 85, left hemisphere 108.3
2824 Male, age 61, right hemisphere 103.9
2732 Male, age 80, right hemisphere 99.4
1856 Female, age 91, right hemisphere 97.6
1783 Male, age 74, unknown 93.5
Nucleus basalis of Meynert
nTPM: 99.7
2821 Male, age 75, both hemispheres 102.9
2393 Male, age 80, right hemisphere 100.4
2569 Male, age 61, both hemispheres 99.1
2484 Female, age 94, left hemisphere 96.3
Nucleus of the diagonal band
nTPM: 87.6
1812 Female, age 91, both hemispheres 107.5
1979 Male, age 74, unknown 93.4
2775 Male, age 80, right hemisphere 83.7
2029 Male, age 61, right hemisphere 82.1
2195 Female, age 85, both hemispheres 71.1
Putamen
nTPM: 96.6
2482 Female, age 94, left hemisphere 140.2
1937 Female, age 91, right hemisphere 101.4
2466 Female, age 79, unknown 95.7
1829 Male, age 74, unknown 94.0
1838 Male, age 80, right hemisphere 88.1
2489 Female, age 72, unknown 78.5
2647 Male, age 75, left hemisphere 78.1
Septal nuclei
nTPM: 93.7
2199 Male, age 80, right hemisphere 109.5
2629 Female, age 94, right hemisphere 99.0
2394 Male, age 61, left hemisphere 97.1
2031 Female, age 72, unknown 91.1
2059 Female, age 85, both hemispheres 90.2
2009 Female, age 91, both hemispheres 86.9
1960 Male, age 74, unknown 82.3
Stria terminalis, bed nucleus
nTPM: 76.9
1974 Female, age 91, both hemispheres 82.7
2201 Male, age 74, unknown 80.1
2486 Female, age 94, both hemispheres 67.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 181.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 160.4
Samples: 246

Max nTPM: 393.6
Min nTPM: 77.0
Std nTPM: 42.2
Median nTPM: 153.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 393.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 351.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 285.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 279.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 278.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 254.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 251.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 249.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 240.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 238.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 237.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 157.6
Samples: 246

Max nTPM: 558.0
Min nTPM: 89.6
Std nTPM: 50.0
Median nTPM: 144.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 558.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 338.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 333.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 326.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 308.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 278.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 278.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 274.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 264.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 250.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 247.5
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Brain - Putamen (basal ganglia)
Average nTPM: 181.8
Samples: 205

Max nTPM: 455.6
Min nTPM: 104.7
Std nTPM: 49.2
Median nTPM: 172.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 455.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 364.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 359.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 341.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 335.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 285.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 276.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 276.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 262.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 258.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 257.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 187.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.1
FF:10164-103B2 76 years, female 111.1
Nucleus accumbens
Scaled Tags Per Million: 132.7
FF:10037-101F1 23-56 years, mixed 132.7
Putamen
Scaled Tags Per Million: 130.8
FF:10176-103C5 60 years, female 130.8
Globus pallidus
Scaled Tags Per Million: 187.2
FF:10175-103C4 60 years, female 255.0
FF:10161-103A8 76 years, female 119.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 75.6
Pig sample Sample description nTPM
Caudate
nTPM: 62.3
Samples: 4

Max nTPM: 67.6
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 67.6
Sample C Male 57.9
Sample D Male 67.6
Putamen
nTPM: 75.6
Samples: 4

Max nTPM: 85.1
Min nTPM: 63.3
Sample A Female 81.9
Sample B Female 63.3
Sample C Male 85.1
Sample D Male 72.0
Septum
nTPM: 72.8
Samples: 4

Max nTPM: 85.7
Min nTPM: 61.7
Sample A Female 61.7
Sample B Female 68.4
Sample C Male 85.7
Sample D Male 75.2
Ventral pallidum
nTPM: 63.2
Samples: 4

Max nTPM: 86.5
Min nTPM: 48.4
Sample A Female 48.4
Sample B Female 86.5
Sample C Male 57.6
Sample D Male 60.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 188.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 178.8
Samples: 4

Max nTPM: 186.2
Min nTPM: 171.5
Sample A Male 171.5
Sample B Male 176.8
Sample C Female 186.2
Sample D Female 180.8
Septum
nTPM: 188.4
Samples: 4

Max nTPM: 210.1
Min nTPM: 164.2
Sample A Male 164.2
Sample B Male 210.1
Sample C Female 201.1
Sample D Female 178.3
Ventral forebrain
nTPM: 174.2
Samples: 4

Max nTPM: 213.2
Min nTPM: 146.7
Sample A Male 146.7
Sample B Male 168.6
Sample C Female 213.2
Sample D Female 168.2

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 2.5
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.9
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 2.7
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 1.0

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