MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.6 nTPM
HPA Brain:32.3 nTPM
GTEx:6.6 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:8.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.1
2828 Female, age 72, unknown 32.7
1830 Male, age 51, unknown 32.1
1870 Female, age 42, unknown 31.9
2019 Male, age 18, unknown 29.2
1833 Male, age 53, unknown 29.0
2411 Female, age 72, unknown 27.1
1827 Male, age 72, unknown 24.4
2666 Male, age 74, left hemisphere 22.6
2219 Male, age 76, both hemispheres 21.1
2586 Male, age 75, left hemisphere 21.0
Dorsal raphe nucleus
nTPM: 32.3
2016 Female, age 72, unknown 37.6
2298 Female, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 29.9
1828 Male, age 53, unknown 29.2
2047 Male, age 72, unknown 29.0
Inferior colliculus
nTPM: 25.3
2097 Female, age 72, unknown 26.7
2849 Male, age 72, unknown 26.5
1848 Female, age 42, unknown 26.2
1890 Male, age 53, unknown 22.0
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 26.9
2502 Female, age 75, unknown 27.5
1795 Male, age 51, unknown 27.4
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 29.4
2850 Male, age 76, both hemispheres 34.8
2464 Female, age 72, unknown 28.5
1831 Male, age 72, unknown 27.2
1840 Male, age 53, unknown 27.0
Periaquaductal grey, lateral
nTPM: 30.0
2272 Male, age 74, both hemispheres 31.8
2140 Male, age 76, both hemispheres 31.3
2053 Male, age 18, unknown 26.9
Pretectal area
nTPM: 25.9
2273 Male, age 74, both hemispheres 35.2
2407 Male, age 75, both hemispheres 28.7
2224 Female, age 72, unknown 28.6
2316 Male, age 76, right hemisphere 28.1
2825 Male, age 18, unknown 28.0
2667 Female, age 75, unknown 27.3
1817 Female, age 42, unknown 24.7
1815 Male, age 53, unknown 24.2
1944 Female, age 72, unknown 22.3
2007 Male, age 72, unknown 21.1
1816 Male, age 51, unknown 16.6
Red nucleus
nTPM: 29.5
1904 Male, age 53, unknown 35.9
1865 Male, age 51, unknown 32.2
2503 Female, age 72, unknown 32.2
1821 Female, age 72, unknown 32.1
2769 Male, age 72, unknown 30.6
1954 Female, age 42, unknown 30.1
2227 Male, age 72, unknown 29.8
2785 Male, age 18, unknown 29.7
2588 Male, age 74, left hemisphere 28.2
2725 Female, age 75, unknown 28.2
2823 Male, age 76, right hemisphere 26.2
2584 Male, age 75, left hemisphere 19.2
Substantia nigra
nTPM: 31.4
2409 Female, age 72, unknown 39.2
1941 Male, age 53, unknown 37.7
2699 Male, age 18, unknown 35.5
2241 Male, age 72, unknown 34.4
1851 Male, age 51, unknown 31.8
1916 Female, age 42, unknown 31.7
2665 Male, age 74, both hemispheres 27.5
1889 Female, age 72, unknown 27.3
2590 Female, age 75, unknown 26.6
2583 Male, age 75, right hemisphere 22.0
Superior colliculus
nTPM: 26.8
1913 Female, age 42, unknown 34.7
1995 Male, age 72, unknown 33.5
1839 Male, age 51, unknown 29.5
2668 Female, age 75, unknown 29.1
2587 Male, age 74, left hemisphere 27.5
1895 Male, age 76, right hemisphere 24.4
2087 Female, age 72, unknown 23.8
2664 Male, age 75, both hemispheres 22.3
2261 Male, age 18, unknown 21.9
1796 Male, age 53, unknown 21.7
Ventral tegmental area
nTPM: 28.1
2021 Male, age 53, unknown 30.1
2223 Female, age 72, unknown 29.6
2410 Female, age 72, unknown 29.3
1915 Female, age 42, unknown 28.2
1942 Male, age 51, unknown 27.7
2218 Male, age 76, both hemispheres 23.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.6
Samples: 139

Max nTPM: 13.8
Min nTPM: 3.5
Std nTPM: 1.6
Median nTPM: 6.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 11.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 10.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 10.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 9.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 9.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 9.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 9.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.3
Sample A Female 14.2
Sample B Female 14.7
Sample C Male 12.3
Sample D Male 13.5
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 8.7
Sample A Female 21.8
Sample B Female 13.4
Sample C Male 11.1
Sample D Male 8.7
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 13.5
Min nTPM: 11.8
Sample B Female 13.5
Sample C Male 11.8
Sample D Male 13.1
Superior colliculi
nTPM: 12.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.3
Sample A Female 11.7
Sample B Female 15.7
Sample C Male 10.3
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 8.7
Sample C Female 8.8
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69626588 Antisense, RP_050426_04_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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