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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AJUBA is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
77.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
77.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
67.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
59.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
57.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
55.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
54.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
53.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
49.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.9
685
Tumor
1.9
743
Tumor
1.8
131
Tumor
1.8
715
Tumor
1.5
413
Tumor
1.5
387
Tumor
1.4
967
Tumor
1.2
483
Tumor
1.2
863
Tumor
1.1
285
Tumor
1.0
473
Tumor
1.0
477
Tumor
1.0
951
Tumor
1.0
1015
Tumor
1.0
135
Tumor
1.0
535
Tumor
0.9
921
Tumor
0.9
445
Tumor
0.9
977
Tumor
0.9
617
Tumor
0.9
671
Tumor
0.8
817
Tumor
0.8
425
Tumor
0.8
925
Tumor
0.8
615
Tumor
0.8
393
Tumor
0.7
755
Tumor
0.7
741
Tumor
0.7
231
Tumor
0.7
983
Tumor
0.7
627
Tumor
0.7
365
Tumor
0.7
137
Tumor
0.7
815
Tumor
0.7
1025
Tumor
0.7
297
Tumor
0.7
1027
Tumor
0.7
493
Tumor
0.6
497
Tumor
0.6
363
Tumor
0.6
517
Tumor
0.6
975
Tumor
0.6
513
Tumor
0.6
567
Tumor
0.5
955
Tumor
0.5
965
Tumor
0.5
455
Tumor
0.5
443
Tumor
0.5
873
Tumor
0.5
257
Tumor
0.5
537
Tumor
0.5
221
Tumor
0.5
261
Tumor
0.5
523
Tumor
0.4
956
Normal
0.4
451
Tumor
0.4
435
Tumor
0.4
737
Tumor
0.4
391
Tumor
0.4
851
Tumor
0.4
665
Tumor
0.4
963
Tumor
0.4
463
Tumor
0.4
367
Tumor
0.4
923
Tumor
0.4
113
Tumor
0.4
528
Normal
0.4
433
Tumor
0.4
881
Tumor
0.4
271
Tumor
0.4
268
Normal
0.3
465
Tumor
0.3
952
Normal
0.3
713
Tumor
0.3
415
Tumor
0.3
341
Tumor
0.3
1028
Normal
0.3
745
Tumor
0.3
123
Tumor
0.3
913
Tumor
0.3
746
Normal
0.3
874
Normal
0.3
943
Tumor
0.3
785
Tumor
0.3
714
Normal
0.3
533
Tumor
0.3
868
Normal
0.2
727
Tumor
0.2
641
Tumor
0.2
385
Tumor
0.2
331
Tumor
0.2
312
Normal
0.2
355
Tumor
0.2
527
Tumor
0.2
284
Normal
0.2
487
Tumor
0.2
937
Tumor
0.2
978
Normal
0.2
267
Tumor
0.2
434
Normal
0.2
698
Normal
0.2
112
Tumor
0.2
1045
Tumor
0.2
217
Tumor
0.2
461
Tumor
0.2
553
Tumor
0.2
471
Tumor
0.1
515
Tumor
0.1
525
Tumor
0.1
145
Tumor
0.1
474
Normal
0.1
127
Tumor
0.1
877
Tumor
0.1
878
Normal
0.1
232
Normal
0.1
195
Tumor
0.1
1043
Tumor
0.1
966
Normal
0.1
813
Tumor
0.1
328
Normal
0.1
431
Tumor
0.1
187
Tumor
0.1
1041
Tumor
0.1
915
Tumor
0.1
916
Normal
0.1
136
Normal
0.1
171
Tumor
0.1
375
Tumor
0.1
481
Tumor
0.1
883
Tumor
0.0
262
Normal
0.0
917
Tumor
0.0
867
Tumor
0.0
911
Tumor
0.0
258
Normal
0.0
816
Normal
0.0
272
Normal
0.0
444
Normal
0.0
814
Normal
0.0
557
Tumor
0.0
213
Tumor
0.0
672
Normal
0.0
616
Normal
0.0
223
Tumor
0.0
546
Normal
0.0
286
Normal
0.0
722
Normal
0.0
1044
Normal
0.0
357
Tumor
0.0
283
Tumor
-0.1
857
Tumor
-0.1
395
Tumor
-0.1
478
Normal
-0.1
695
Tumor
-0.1
884
Normal
-0.1
662
Normal
-0.1
918
Normal
-0.1
514
Normal
-0.1
661
Tumor
-0.1
534
Normal
-0.1
926
Normal
-0.1
1031
Tumor
-0.1
313
Tumor
-0.1
861
Tumor
-0.1
447
Tumor
-0.1
125
Tumor
-0.1
571
Tumor
-0.1
1022
Normal
-0.1
914
Normal
-0.1
852
Normal
-0.1
866
Normal
-0.1
124
Normal
-0.1
563
Tumor
-0.1
416
Normal
-0.1
421
Tumor
-0.1
161
Tumor
-0.1
383
Tumor
-0.1
777
Tumor
-0.1
524
Normal
-0.1
482
Normal
-0.1
361
Tumor
-0.2
944
Normal
-0.2
446
Normal
-0.2
558
Normal
-0.2
188
Normal
-0.2
516
Normal
-0.2
666
Normal
-0.2
545
Tumor
-0.2
664
Normal
-0.2
448
Normal
-0.2
648
Normal
-0.2
958
Normal
-0.2
422
Normal
-0.2
968
Normal
-0.2
982
Normal
-0.2
1042
Normal
-0.2
953
Tumor
-0.2
728
Normal
-0.2
128
Normal
-0.2
472
Normal
-0.2
494
Normal
-0.2
368
Normal
-0.2
428
Normal
-0.2
744
Normal
-0.2
364
Normal
-0.2
412
Normal
-0.2
647
Tumor
-0.2
492
Normal
-0.2
414
Normal
-0.2
1021
Tumor
-0.2
224
Normal
-0.2
518
Normal
-0.2
954
Normal
-0.2
865
Tumor
-0.2
126
Normal
-0.2
484
Normal
-0.2
277
Tumor
-0.2
642
Normal
-0.2
491
Tumor
-0.2
114
Normal
-0.2
327
Tumor
-0.3
436
Normal
-0.3
464
Normal
-0.3
311
Tumor
-0.3
536
Normal
-0.3
362
Normal
-0.3
147
Tumor
-0.3
452
Normal
-0.3
636
Normal
-0.3
1046
Normal
-0.3
498
Normal
-0.3
1013
Tumor
-0.3
111
Normal
-0.3
554
Normal
-0.3
386
Normal
-0.3
864
Normal
-0.3
1016
Normal
-0.3
456
Normal
-0.3
1026
Normal
-0.3
574
Normal
-0.3
716
Normal
-0.3
564
Normal
-0.3
618
Normal
-0.3
488
Normal
-0.3
396
Normal
-0.4
132
Normal
-0.4
786
Normal
-0.4
778
Normal
-0.4
278
Normal
-0.4
427
Tumor
-0.4
526
Normal
-0.4
976
Normal
-0.4
538
Normal
-0.4
148
Normal
-0.4
823
Tumor
-0.4
146
Normal
-0.4
138
Normal
-0.4
924
Normal
-0.4
466
Normal
-0.4
686
Normal
-0.4
468
Normal
-0.4
663
Tumor
-0.4
938
Normal
-0.4
922
Normal
-0.4
426
Normal
-0.4
352
Normal
-0.4
354
Normal
-0.4
862
Normal
-0.4
696
Normal
-0.4
572
Normal
-0.4
462
Normal
-0.4
824
Normal
-0.4
984
Normal
-0.4
191
Tumor
-0.4
358
Normal
-0.4
964
Normal
-0.5
724
Normal
-0.5
351
Tumor
-0.5
172
Normal
-0.5
185
Tumor
-0.5
141
Tumor
-0.5
432
Normal
-0.5
424
Normal
-0.5
212
Normal
-0.5
742
Normal
-0.5
1032
Normal
-0.5
228
Normal
-0.5
423
Tumor
-0.5
957
Tumor
-0.5
882
Normal
-0.5
344
Normal
-0.5
162
Normal
-0.5
818
Normal
-0.5
628
Normal
-0.5
467
Tumor
-0.5
214
Normal
-0.5
723
Tumor
-0.5
366
Normal
-0.5
858
Normal
-0.5
388
Normal
-0.5
568
Normal
-0.5
1014
Normal
-0.5
697
Tumor
-0.5
981
Tumor
-0.5
912
Normal
-0.6
227
Tumor
-0.6
356
Normal
-0.6
392
Normal
-0.6
142
Normal
-0.6
342
Normal
-0.7
218
Normal
-0.7
192
Normal
-0.7
343
Tumor
-0.7
186
Normal
-0.7
738
Normal
-0.7
384
Normal
-0.7
394
Normal
-0.7
353
Tumor
-0.7
298
Normal
-0.7
721
Tumor
-0.7
222
Normal
-0.8
376
Normal
-0.8
756
Normal
-0.8
196
Normal
-0.8
411
Tumor
-0.8
314
Normal
-0.8
573
Tumor
-0.8
332
Normal
-1.1
211
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.