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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
0.8
557
Tumor
0.7
231
Tumor
0.7
685
Tumor
0.7
715
Tumor
0.7
267
Tumor
0.6
697
Tumor
0.6
135
Tumor
0.5
567
Tumor
0.5
421
Tumor
0.5
537
Tumor
0.4
435
Tumor
0.4
283
Tumor
0.4
471
Tumor
0.4
745
Tumor
0.3
616
Normal
0.3
147
Tumor
0.3
463
Tumor
0.3
877
Tumor
0.3
527
Tumor
0.3
665
Tumor
0.3
1025
Tumor
0.3
426
Normal
0.2
641
Tumor
0.2
314
Normal
0.2
414
Normal
0.2
443
Tumor
0.2
484
Normal
0.2
863
Tumor
0.2
851
Tumor
0.2
912
Normal
0.2
553
Tumor
0.2
185
Tumor
0.2
436
Normal
0.2
663
Tumor
0.2
1043
Tumor
0.2
937
Tumor
0.2
376
Normal
0.2
422
Normal
0.2
221
Tumor
0.2
813
Tumor
0.2
664
Normal
0.2
1022
Normal
0.2
223
Tumor
0.1
332
Normal
0.1
721
Tumor
0.1
341
Tumor
0.1
132
Normal
0.1
525
Tumor
0.1
951
Tumor
0.1
1027
Tumor
0.1
271
Tumor
0.1
327
Tumor
0.1
466
Normal
0.1
428
Normal
0.1
554
Normal
0.1
187
Tumor
0.1
546
Normal
0.1
698
Normal
0.1
618
Normal
0.1
113
Tumor
0.1
672
Normal
0.1
222
Normal
0.1
368
Normal
0.1
514
Normal
0.1
636
Normal
0.1
944
Normal
0.1
111
Normal
0.1
671
Tumor
0.1
488
Normal
0.1
343
Tumor
0.1
491
Tumor
0.1
385
Tumor
0.1
112
Tumor
0.1
364
Normal
0.1
142
Normal
0.1
363
Tumor
0.1
615
Tumor
0.1
278
Normal
0.1
464
Normal
0.1
528
Normal
0.1
1046
Normal
0.1
534
Normal
0.1
487
Tumor
0.1
666
Normal
0.1
526
Normal
0.1
564
Normal
0.1
881
Tumor
0.1
714
Normal
0.1
412
Normal
0.1
713
Tumor
0.1
952
Normal
0.1
756
Normal
0.1
571
Tumor
0.1
356
Normal
0.1
468
Normal
0.1
648
Normal
0.1
472
Normal
0.1
568
Normal
0.1
915
Tumor
0.1
1032
Normal
0.1
186
Normal
0.1
882
Normal
0.1
367
Tumor
0.1
926
Normal
0.1
1014
Normal
0.1
938
Normal
0.1
518
Normal
0.1
298
Normal
0.1
865
Tumor
0.1
824
Normal
0.0
424
Normal
0.0
558
Normal
0.0
818
Normal
0.0
743
Tumor
0.0
446
Normal
0.0
125
Tumor
0.0
817
Tumor
0.0
127
Tumor
0.0
862
Normal
0.0
137
Tumor
0.0
921
Tumor
0.0
983
Tumor
0.0
964
Normal
0.0
342
Normal
0.0
746
Normal
0.0
958
Normal
0.0
635
Tumor
0.0
696
Normal
0.0
191
Tumor
0.0
967
Tumor
0.0
353
Tumor
0.0
415
Tumor
0.0
277
Tumor
0.0
312
Normal
0.0
975
Tumor
0.0
456
Normal
0.0
867
Tumor
0.0
448
Normal
0.0
742
Normal
0.0
716
Normal
0.0
922
Normal
0.0
145
Tumor
0.0
128
Normal
0.0
362
Normal
0.0
864
Normal
0.0
1044
Normal
0.0
968
Normal
0.0
497
Tumor
0.0
232
Normal
0.0
148
Normal
0.0
924
Normal
0.0
778
Normal
0.0
146
Normal
0.0
627
Tumor
0.0
494
Normal
0.0
686
Normal
0.0
162
Normal
0.0
211
Tumor
0.0
963
Tumor
0.0
1026
Normal
0.0
262
Normal
0.0
498
Normal
0.0
432
Normal
0.0
524
Normal
0.0
131
Tumor
0.0
384
Normal
0.0
455
Tumor
0.0
574
Normal
0.0
1021
Tumor
0.0
617
Tumor
0.0
138
Normal
0.0
451
Tumor
0.0
136
Normal
0.0
358
Normal
0.0
123
Tumor
0.0
662
Normal
0.0
1045
Tumor
0.0
923
Tumor
0.0
375
Tumor
0.0
354
Normal
0.0
465
Tumor
0.0
272
Normal
0.0
722
Normal
0.0
723
Tumor
0.0
196
Normal
0.0
728
Normal
0.0
258
Normal
0.0
328
Normal
0.0
976
Normal
0.0
434
Normal
0.0
124
Normal
0.0
1016
Normal
0.0
533
Tumor
0.0
918
Normal
0.0
433
Tumor
0.0
228
Normal
0.0
492
Normal
0.0
916
Normal
0.0
387
Tumor
0.0
628
Normal
0.0
786
Normal
0.0
172
Normal
0.0
538
Normal
0.0
513
Tumor
-0.1
914
Normal
-0.1
1042
Normal
-0.1
261
Tumor
-0.1
217
Tumor
-0.1
388
Normal
-0.1
883
Tumor
-0.1
884
Normal
-0.1
866
Normal
-0.1
978
Normal
-0.1
212
Normal
-0.1
516
Normal
-0.1
738
Normal
-0.1
286
Normal
-0.1
481
Tumor
-0.1
727
Tumor
-0.1
744
Normal
-0.1
982
Normal
-0.1
816
Normal
-0.1
536
Normal
-0.1
868
Normal
-0.1
416
Normal
-0.1
452
Normal
-0.1
474
Normal
-0.1
352
Normal
-0.1
956
Normal
-0.1
925
Tumor
-0.1
423
Tumor
-0.1
195
Tumor
-0.1
1028
Normal
-0.1
724
Normal
-0.1
344
Normal
-0.1
361
Tumor
-0.1
852
Normal
-0.1
482
Normal
-0.1
858
Normal
-0.1
462
Normal
-0.1
467
Tumor
-0.1
572
Normal
-0.1
413
Tumor
-0.1
913
Tumor
-0.1
365
Tumor
-0.1
515
Tumor
-0.1
357
Tumor
-0.1
874
Normal
-0.1
218
Normal
-0.1
366
Normal
-0.1
331
Tumor
-0.1
523
Tumor
-0.1
965
Tumor
-0.1
955
Tumor
-0.1
878
Normal
-0.1
313
Tumor
-0.1
383
Tumor
-0.1
984
Normal
-0.1
386
Normal
-0.1
823
Tumor
-0.1
954
Normal
-0.1
396
Normal
-0.1
284
Normal
-0.1
1013
Tumor
-0.1
444
Normal
-0.1
966
Normal
-0.1
1041
Tumor
-0.1
981
Tumor
-0.1
141
Tumor
-0.1
394
Normal
-0.1
642
Normal
-0.1
563
Tumor
-0.1
114
Normal
-0.1
391
Tumor
-0.2
395
Tumor
-0.2
171
Tumor
-0.2
917
Tumor
-0.2
268
Normal
-0.2
161
Tumor
-0.2
861
Tumor
-0.2
224
Normal
-0.2
297
Tumor
-0.2
392
Normal
-0.2
214
Normal
-0.2
126
Normal
-0.2
815
Tumor
-0.2
873
Tumor
-0.2
478
Normal
-0.2
785
Tumor
-0.2
427
Tumor
-0.2
1031
Tumor
-0.2
213
Tumor
-0.2
257
Tumor
-0.2
1015
Tumor
-0.2
953
Tumor
-0.2
285
Tumor
-0.2
573
Tumor
-0.2
911
Tumor
-0.2
192
Normal
-0.2
517
Tumor
-0.2
355
Tumor
-0.2
814
Normal
-0.2
977
Tumor
-0.3
943
Tumor
-0.3
737
Tumor
-0.3
188
Normal
-0.3
857
Tumor
-0.3
431
Tumor
-0.3
461
Tumor
-0.3
493
Tumor
-0.3
473
Tumor
-0.3
425
Tumor
-0.3
311
Tumor
-0.3
957
Tumor
-0.3
535
Tumor
-0.4
393
Tumor
-0.4
411
Tumor
-0.4
661
Tumor
-0.4
477
Tumor
-0.4
755
Tumor
-0.4
447
Tumor
-0.4
545
Tumor
-0.4
351
Tumor
-0.4
647
Tumor
-0.4
695
Tumor
-0.4
227
Tumor
-0.5
483
Tumor
-0.5
777
Tumor
-0.5
741
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
