MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.1 nTPM
HPA Brain:135.0 nTPM
GTEx:61.1 nTPM
FANTOM5:181.9 Scaled Tags Per Million
Pig:119.8 nTPM
Mouse:42.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.7
2019 Male, age 18, unknown 148.6
1870 Female, age 42, unknown 142.5
1830 Male, age 51, unknown 139.8
1833 Male, age 53, unknown 136.5
2411 Female, age 72, unknown 129.7
2219 Male, age 76, both hemispheres 115.1
2666 Male, age 74, left hemisphere 101.0
2828 Female, age 72, unknown 94.2
1827 Male, age 72, unknown 88.5
2586 Male, age 75, left hemisphere 71.2
Dorsal raphe nucleus
nTPM: 84.4
2750 Male, age 76, both hemispheres 129.3
1828 Male, age 53, unknown 89.0
2016 Female, age 72, unknown 87.8
2047 Male, age 72, unknown 59.6
2298 Female, age 72, unknown 56.3
Inferior colliculus
nTPM: 87.0
1890 Male, age 53, unknown 96.4
1848 Female, age 42, unknown 91.0
2849 Male, age 72, unknown 84.9
2097 Female, age 72, unknown 75.8
Median raphe nucleus
nTPM: 73.2
2220 Male, age 76, midline 73.2
Periaquaductal grey, anterior
nTPM: 73.0
2502 Female, age 75, unknown 88.3
1947 Male, age 18, unknown 72.1
1795 Male, age 51, unknown 58.6
Periaquaductal grey, dorsal
nTPM: 68.6
2464 Female, age 72, unknown 89.7
1831 Male, age 72, unknown 77.2
2850 Male, age 76, both hemispheres 60.8
1840 Male, age 53, unknown 46.9
Periaquaductal grey, lateral
nTPM: 69.2
2053 Male, age 18, unknown 76.1
2272 Male, age 74, both hemispheres 71.4
2140 Male, age 76, both hemispheres 59.9
Pretectal area
nTPM: 85.6
1815 Male, age 53, unknown 113.5
2007 Male, age 72, unknown 102.0
1817 Female, age 42, unknown 100.7
2316 Male, age 76, right hemisphere 95.4
2667 Female, age 75, unknown 88.9
1944 Female, age 72, unknown 81.5
2407 Male, age 75, both hemispheres 77.1
2825 Male, age 18, unknown 74.5
1816 Male, age 51, unknown 73.2
2273 Male, age 74, both hemispheres 67.8
2224 Female, age 72, unknown 67.6
Red nucleus
nTPM: 135.0
1865 Male, age 51, unknown 159.0
1904 Male, age 53, unknown 157.1
2785 Male, age 18, unknown 155.3
1821 Female, age 72, unknown 154.3
1954 Female, age 42, unknown 147.9
2503 Female, age 72, unknown 141.0
2823 Male, age 76, right hemisphere 137.0
2227 Male, age 72, unknown 135.2
2769 Male, age 72, unknown 132.2
2588 Male, age 74, left hemisphere 123.0
2725 Female, age 75, unknown 89.9
2584 Male, age 75, left hemisphere 88.2
Substantia nigra
nTPM: 91.0
2409 Female, age 72, unknown 116.1
1889 Female, age 72, unknown 105.7
2590 Female, age 75, unknown 101.2
1851 Male, age 51, unknown 92.7
2583 Male, age 75, right hemisphere 91.3
2665 Male, age 74, both hemispheres 88.8
2699 Male, age 18, unknown 86.4
2241 Male, age 72, unknown 79.7
1916 Female, age 42, unknown 74.0
1941 Male, age 53, unknown 73.9
Superior colliculus
nTPM: 97.6
1913 Female, age 42, unknown 155.1
1995 Male, age 72, unknown 132.1
2587 Male, age 74, left hemisphere 109.5
1895 Male, age 76, right hemisphere 109.2
1839 Male, age 51, unknown 98.7
2668 Female, age 75, unknown 95.2
2087 Female, age 72, unknown 80.7
1796 Male, age 53, unknown 75.8
2261 Male, age 18, unknown 65.1
2664 Male, age 75, both hemispheres 55.1
Ventral tegmental area
nTPM: 91.3
2410 Female, age 72, unknown 113.5
2223 Female, age 72, unknown 107.8
2218 Male, age 76, both hemispheres 82.7
1915 Female, age 42, unknown 82.2
2021 Male, age 53, unknown 82.0
1942 Male, age 51, unknown 79.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.1
Samples: 139

Max nTPM: 157.5
Min nTPM: 23.6
Std nTPM: 26.9
Median nTPM: 54.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 157.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 152.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 148.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 130.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 129.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 122.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 118.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 115.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 107.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 106.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 181.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.9
FF:10158-103A5 76 years, female 181.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 99.1
Samples: 4

Max nTPM: 137.8
Min nTPM: 77.0
Sample A Female 101.7
Sample B Female 79.8
Sample C Male 77.0
Sample D Male 137.8
Midbrain
nTPM: 119.9
Samples: 4

Max nTPM: 232.4
Min nTPM: 77.4
Sample A Female 232.4
Sample B Female 84.9
Sample C Male 84.7
Sample D Male 77.4
Periaqueductal gray
nTPM: 78.2
Samples: 3

Max nTPM: 82.3
Min nTPM: 72.4
Sample B Female 82.3
Sample C Male 72.4
Sample D Male 79.8
Superior colliculi
nTPM: 97.8
Samples: 4

Max nTPM: 106.3
Min nTPM: 79.9
Sample A Female 104.8
Sample B Female 79.9
Sample C Male 106.3
Sample D Male 100.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 46.7
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 40.8
Sample C Female 46.7
Sample D Female 43.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73712762 Antisense, RP_051206_02_C11, Mouse strain C57BL/6J (56 days, male) 0.3

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