We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC44A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
213.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
108.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
106.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
101.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
84.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
67.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
53.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC44A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
112.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
43.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
271
Tumor
1.5
422
Normal
0.8
672
Normal
0.8
471
Tumor
0.6
192
Normal
0.6
975
Tumor
0.6
414
Normal
0.6
816
Normal
0.5
332
Normal
0.5
298
Normal
0.5
664
Normal
0.5
744
Normal
0.5
641
Tumor
0.5
185
Tumor
0.5
124
Normal
0.5
1025
Tumor
0.5
434
Normal
0.5
917
Tumor
0.4
312
Normal
0.4
148
Normal
0.4
376
Normal
0.4
314
Normal
0.4
162
Normal
0.4
574
Normal
0.4
921
Tumor
0.4
424
Normal
0.4
262
Normal
0.4
642
Normal
0.4
311
Tumor
0.4
146
Normal
0.4
878
Normal
0.4
368
Normal
0.4
538
Normal
0.4
188
Normal
0.4
272
Normal
0.4
392
Normal
0.4
297
Tumor
0.3
138
Normal
0.3
366
Normal
0.3
648
Normal
0.3
467
Tumor
0.3
456
Normal
0.3
474
Normal
0.3
186
Normal
0.3
1031
Tumor
0.3
223
Tumor
0.3
421
Tumor
0.3
344
Normal
0.3
874
Normal
0.3
554
Normal
0.3
172
Normal
0.3
278
Normal
0.3
232
Normal
0.3
352
Normal
0.3
742
Normal
0.3
384
Normal
0.3
142
Normal
0.3
952
Normal
0.3
394
Normal
0.3
432
Normal
0.3
386
Normal
0.3
426
Normal
0.3
261
Tumor
0.3
446
Normal
0.3
1028
Normal
0.3
111
Normal
0.3
428
Normal
0.2
444
Normal
0.2
572
Normal
0.2
126
Normal
0.2
128
Normal
0.2
362
Normal
0.2
461
Tumor
0.2
914
Normal
0.2
492
Normal
0.2
618
Normal
0.2
636
Normal
0.2
268
Normal
0.2
331
Tumor
0.2
558
Normal
0.2
466
Normal
0.2
218
Normal
0.2
221
Tumor
0.2
258
Normal
0.2
778
Normal
0.2
738
Normal
0.2
1022
Normal
0.2
568
Normal
0.2
662
Normal
0.2
342
Normal
0.2
564
Normal
0.2
518
Normal
0.2
882
Normal
0.2
354
Normal
0.1
412
Normal
0.1
963
Tumor
0.1
396
Normal
0.1
416
Normal
0.1
546
Normal
0.1
968
Normal
0.1
852
Normal
0.1
1026
Normal
0.1
498
Normal
0.1
958
Normal
0.1
136
Normal
0.1
212
Normal
0.1
214
Normal
0.1
698
Normal
0.1
464
Normal
0.1
491
Tumor
0.1
132
Normal
0.1
468
Normal
0.1
436
Normal
0.1
388
Normal
0.1
516
Normal
0.1
448
Normal
0.1
211
Tumor
0.1
187
Tumor
0.1
666
Normal
0.1
976
Normal
0.1
196
Normal
0.1
228
Normal
0.1
966
Normal
0.1
536
Normal
0.1
222
Normal
0.0
125
Tumor
0.0
114
Normal
0.0
563
Tumor
0.0
526
Normal
0.0
462
Normal
0.0
728
Normal
0.0
553
Tumor
0.0
327
Tumor
0.0
823
Tumor
0.0
964
Normal
0.0
478
Normal
0.0
686
Normal
0.0
494
Normal
0.0
534
Normal
0.0
723
Tumor
0.0
472
Normal
0.0
452
Normal
0.0
866
Normal
0.0
358
Normal
0.0
423
Tumor
0.0
1016
Normal
0.0
524
Normal
0.0
477
Tumor
0.0
1044
Normal
0.0
455
Tumor
0.0
343
Tumor
0.0
356
Normal
-0.1
615
Tumor
-0.1
714
Normal
-0.1
818
Normal
-0.1
737
Tumor
-0.1
727
Tumor
-0.1
1032
Normal
-0.1
713
Tumor
-0.1
545
Tumor
-0.1
716
Normal
-0.1
224
Normal
-0.1
696
Normal
-0.1
722
Normal
-0.1
217
Tumor
-0.1
984
Normal
-0.1
756
Normal
-0.1
353
Tumor
-0.1
286
Normal
-0.1
513
Tumor
-0.1
982
Normal
-0.1
881
Tumor
-0.1
415
Tumor
-0.1
364
Normal
-0.1
141
Tumor
-0.1
328
Normal
-0.1
1042
Normal
-0.1
127
Tumor
-0.1
814
Normal
-0.1
864
Normal
-0.1
528
Normal
-0.1
956
Normal
-0.1
447
Tumor
-0.1
363
Tumor
-0.1
824
Normal
-0.1
161
Tumor
-0.1
786
Normal
-0.1
616
Normal
-0.1
746
Normal
-0.1
628
Normal
-0.1
954
Normal
-0.1
355
Tumor
-0.1
145
Tumor
-0.2
488
Normal
-0.2
627
Tumor
-0.2
514
Normal
-0.2
393
Tumor
-0.2
813
Tumor
-0.2
313
Tumor
-0.2
525
Tumor
-0.2
213
Tumor
-0.2
482
Normal
-0.2
365
Tumor
-0.2
433
Tumor
-0.2
857
Tumor
-0.2
868
Normal
-0.2
924
Normal
-0.2
912
Normal
-0.2
938
Normal
-0.2
918
Normal
-0.2
137
Tumor
-0.2
884
Normal
-0.2
284
Normal
-0.2
858
Normal
-0.2
484
Normal
-0.2
413
Tumor
-0.2
743
Tumor
-0.2
465
Tumor
-0.2
383
Tumor
-0.2
195
Tumor
-0.2
883
Tumor
-0.2
567
Tumor
-0.2
944
Normal
-0.3
715
Tumor
-0.3
277
Tumor
-0.3
922
Normal
-0.3
1014
Normal
-0.3
817
Tumor
-0.3
493
Tumor
-0.3
341
Tumor
-0.3
671
Tumor
-0.3
647
Tumor
-0.3
943
Tumor
-0.3
445
Tumor
-0.3
1013
Tumor
-0.3
865
Tumor
-0.3
911
Tumor
-0.3
463
Tumor
-0.3
937
Tumor
-0.3
1015
Tumor
-0.3
1045
Tumor
-0.3
916
Normal
-0.3
411
Tumor
-0.3
923
Tumor
-0.3
981
Tumor
-0.3
862
Normal
-0.3
112
Tumor
-0.3
171
Tumor
-0.3
473
Tumor
-0.3
435
Tumor
-0.4
357
Tumor
-0.4
867
Tumor
-0.4
977
Tumor
-0.4
915
Tumor
-0.4
965
Tumor
-0.4
1046
Normal
-0.4
481
Tumor
-0.4
955
Tumor
-0.4
483
Tumor
-0.4
721
Tumor
-0.4
427
Tumor
-0.4
926
Normal
-0.4
877
Tumor
-0.4
913
Tumor
-0.4
191
Tumor
-0.4
741
Tumor
-0.4
745
Tumor
-0.4
227
Tumor
-0.4
443
Tumor
-0.4
537
Tumor
-0.4
515
Tumor
-0.4
267
Tumor
-0.4
873
Tumor
-0.4
571
Tumor
-0.4
695
Tumor
-0.5
957
Tumor
-0.5
978
Normal
-0.5
785
Tumor
-0.5
395
Tumor
-0.5
451
Tumor
-0.5
617
Tumor
-0.5
391
Tumor
-0.5
487
Tumor
-0.5
663
Tumor
-0.5
665
Tumor
-0.5
425
Tumor
-0.5
351
Tumor
-0.5
257
Tumor
-0.5
431
Tumor
-0.5
557
Tumor
-0.6
573
Tumor
-0.6
147
Tumor
-0.6
861
Tumor
-0.6
1043
Tumor
-0.6
777
Tumor
-0.6
375
Tumor
-0.6
863
Tumor
-0.6
724
Normal
-0.6
523
Tumor
-0.6
967
Tumor
-0.6
385
Tumor
-0.6
283
Tumor
-0.6
535
Tumor
-0.6
113
Tumor
-0.6
387
Tumor
-0.7
635
Tumor
-0.7
231
Tumor
-0.7
497
Tumor
-0.7
983
Tumor
-0.7
925
Tumor
-0.7
1041
Tumor
-0.7
135
Tumor
-0.8
951
Tumor
-0.8
755
Tumor
-0.8
361
Tumor
-0.8
367
Tumor
-0.8
953
Tumor
-0.8
123
Tumor
-0.9
517
Tumor
-0.9
851
Tumor
-1.0
815
Tumor
-1.0
285
Tumor
-1.0
661
Tumor
-1.0
697
Tumor
-1.1
527
Tumor
-1.1
1027
Tumor
-1.1
533
Tumor
-1.1
1021
Tumor
-1.3
685
Tumor
-1.3
131
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
