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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIF1C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
77.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
69.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
57.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
50.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
47.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
46.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
29.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KIF1C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.8
937
Tumor
0.7
221
Tumor
0.6
285
Tumor
0.6
921
Tumor
0.6
641
Tumor
0.6
868
Normal
0.5
553
Tumor
0.5
713
Tumor
0.5
915
Tumor
0.5
778
Normal
0.5
1043
Tumor
0.5
756
Normal
0.4
518
Normal
0.4
696
Normal
0.4
865
Tumor
0.4
746
Normal
0.4
484
Normal
0.4
755
Tumor
0.4
862
Normal
0.4
528
Normal
0.4
952
Normal
0.4
223
Tumor
0.4
924
Normal
0.4
212
Normal
0.4
714
Normal
0.4
568
Normal
0.4
964
Normal
0.4
558
Normal
0.4
286
Normal
0.4
975
Tumor
0.4
968
Normal
0.4
534
Normal
0.4
545
Tumor
0.4
786
Normal
0.3
1028
Normal
0.3
572
Normal
0.3
864
Normal
0.3
824
Normal
0.3
526
Normal
0.3
474
Normal
0.3
616
Normal
0.3
557
Tumor
0.3
866
Normal
0.3
448
Normal
0.3
723
Tumor
0.3
554
Normal
0.3
882
Normal
0.3
261
Tumor
0.3
466
Normal
0.3
564
Normal
0.3
926
Normal
0.3
481
Tumor
0.3
472
Normal
0.3
944
Normal
0.3
648
Normal
0.3
618
Normal
0.3
955
Tumor
0.3
356
Normal
0.3
1022
Normal
0.3
447
Tumor
0.3
488
Normal
0.3
392
Normal
0.3
464
Normal
0.3
982
Normal
0.3
546
Normal
0.3
514
Normal
0.3
494
Normal
0.3
1026
Normal
0.3
111
Normal
0.3
451
Tumor
0.3
412
Normal
0.3
363
Tumor
0.3
816
Normal
0.3
697
Tumor
0.3
722
Normal
0.3
1031
Tumor
0.3
742
Normal
0.3
738
Normal
0.3
228
Normal
0.3
818
Normal
0.3
912
Normal
0.3
482
Normal
0.3
664
Normal
0.3
852
Normal
0.3
858
Normal
0.3
462
Normal
0.3
428
Normal
0.3
916
Normal
0.3
958
Normal
0.3
914
Normal
0.3
426
Normal
0.3
922
Normal
0.3
1014
Normal
0.3
716
Normal
0.3
918
Normal
0.3
424
Normal
0.3
422
Normal
0.3
218
Normal
0.3
425
Tumor
0.3
1016
Normal
0.3
284
Normal
0.3
227
Tumor
0.3
628
Normal
0.3
436
Normal
0.3
938
Normal
0.2
698
Normal
0.2
1044
Normal
0.2
128
Normal
0.2
516
Normal
0.2
728
Normal
0.2
414
Normal
0.2
1046
Normal
0.2
966
Normal
0.2
452
Normal
0.2
364
Normal
0.2
258
Normal
0.2
478
Normal
0.2
222
Normal
0.2
954
Normal
0.2
1032
Normal
0.2
874
Normal
0.2
498
Normal
0.2
114
Normal
0.2
368
Normal
0.2
536
Normal
0.2
878
Normal
0.2
851
Tumor
0.2
492
Normal
0.2
671
Tumor
0.2
672
Normal
0.2
394
Normal
0.2
312
Normal
0.2
666
Normal
0.2
136
Normal
0.2
978
Normal
0.2
142
Normal
0.2
196
Normal
0.2
456
Normal
0.2
976
Normal
0.2
214
Normal
0.2
124
Normal
0.2
642
Normal
0.2
298
Normal
0.2
497
Tumor
0.2
956
Normal
0.2
278
Normal
0.2
636
Normal
0.2
362
Normal
0.2
695
Tumor
0.2
186
Normal
0.2
1042
Normal
0.2
984
Normal
0.2
416
Normal
0.2
446
Normal
0.2
358
Normal
0.2
328
Normal
0.2
925
Tumor
0.2
138
Normal
0.2
468
Normal
0.2
884
Normal
0.2
376
Normal
0.2
686
Normal
0.2
877
Tumor
0.1
162
Normal
0.1
172
Normal
0.1
232
Normal
0.1
352
Normal
0.1
662
Normal
0.1
354
Normal
0.1
344
Normal
0.1
538
Normal
0.1
148
Normal
0.1
715
Tumor
0.1
135
Tumor
0.1
432
Normal
0.1
413
Tumor
0.1
224
Normal
0.1
524
Normal
0.1
272
Normal
0.1
777
Tumor
0.1
873
Tumor
0.1
571
Tumor
0.1
386
Normal
0.1
563
Tumor
0.1
366
Normal
0.1
268
Normal
0.1
574
Normal
0.1
923
Tumor
0.1
388
Normal
0.1
126
Normal
0.1
146
Normal
0.1
744
Normal
0.1
471
Tumor
0.1
513
Tumor
0.1
951
Tumor
0.1
131
Tumor
0.1
396
Normal
0.1
385
Tumor
0.1
342
Normal
0.1
262
Normal
0.1
314
Normal
0.1
145
Tumor
0.1
332
Normal
0.0
1025
Tumor
0.0
483
Tumor
0.0
463
Tumor
0.0
271
Tumor
0.0
188
Normal
0.0
963
Tumor
0.0
785
Tumor
0.0
277
Tumor
0.0
1021
Tumor
0.0
384
Normal
0.0
967
Tumor
0.0
493
Tumor
0.0
1027
Tumor
0.0
123
Tumor
0.0
444
Normal
0.0
721
Tumor
0.0
217
Tumor
0.0
911
Tumor
0.0
617
Tumor
0.0
737
Tumor
0.0
267
Tumor
0.0
813
Tumor
0.0
473
Tumor
0.0
297
Tumor
0.0
415
Tumor
0.0
147
Tumor
0.0
573
Tumor
0.0
467
Tumor
0.0
817
Tumor
0.0
195
Tumor
0.0
981
Tumor
0.0
257
Tumor
0.0
455
Tumor
0.0
427
Tumor
0.0
434
Normal
0.0
191
Tumor
-0.1
283
Tumor
-0.1
231
Tumor
-0.1
635
Tumor
-0.1
823
Tumor
-0.1
881
Tumor
-0.1
421
Tumor
-0.1
1041
Tumor
-0.1
913
Tumor
-0.1
192
Normal
-0.1
815
Tumor
-0.1
515
Tumor
-0.1
743
Tumor
-0.1
863
Tumor
-0.1
465
Tumor
-0.1
127
Tumor
-0.1
361
Tumor
-0.1
627
Tumor
-0.1
331
Tumor
-0.1
977
Tumor
-0.1
113
Tumor
-0.1
745
Tumor
-0.1
525
Tumor
-0.1
957
Tumor
-0.1
943
Tumor
-0.1
647
Tumor
-0.1
491
Tumor
-0.1
461
Tumor
-0.1
814
Normal
-0.1
341
Tumor
-0.1
365
Tumor
-0.1
477
Tumor
-0.1
132
Normal
-0.1
387
Tumor
-0.1
411
Tumor
-0.2
443
Tumor
-0.2
615
Tumor
-0.2
537
Tumor
-0.2
185
Tumor
-0.2
883
Tumor
-0.2
1045
Tumor
-0.2
665
Tumor
-0.2
533
Tumor
-0.2
741
Tumor
-0.2
1015
Tumor
-0.2
433
Tumor
-0.2
857
Tumor
-0.2
567
Tumor
-0.2
187
Tumor
-0.2
527
Tumor
-0.2
367
Tumor
-0.2
423
Tumor
-0.2
161
Tumor
-0.2
355
Tumor
-0.2
395
Tumor
-0.2
353
Tumor
-0.2
983
Tumor
-0.2
663
Tumor
-0.2
393
Tumor
-0.3
917
Tumor
-0.3
431
Tumor
-0.3
487
Tumor
-0.3
171
Tumor
-0.3
727
Tumor
-0.3
435
Tumor
-0.3
211
Tumor
-0.3
661
Tumor
-0.3
213
Tumor
-0.3
861
Tumor
-0.3
313
Tumor
-0.3
137
Tumor
-0.3
517
Tumor
-0.3
535
Tumor
-0.3
141
Tumor
-0.4
383
Tumor
-0.4
375
Tumor
-0.4
445
Tumor
-0.4
523
Tumor
-0.4
724
Normal
-0.4
112
Tumor
-0.5
391
Tumor
-0.5
867
Tumor
-0.5
311
Tumor
-0.5
125
Tumor
-0.5
965
Tumor
-0.5
351
Tumor
-0.5
953
Tumor
-0.6
357
Tumor
-0.6
1013
Tumor
-0.7
685
Tumor
-0.7
343
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
