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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
111.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
106.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
101.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
96.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
90.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
84.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
83.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
78.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
69.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
59.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
59.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
59.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
58.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
57.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
54.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
47.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
36.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCTD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
61.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
57.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
52.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
49.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.6
363
Tumor
1.3
128
Normal
1.3
727
Tumor
1.3
1025
Tumor
1.1
965
Tumor
1.0
223
Tumor
1.0
278
Normal
1.0
466
Normal
0.9
755
Tumor
0.9
554
Normal
0.9
517
Tumor
0.8
298
Normal
0.8
983
Tumor
0.7
815
Tumor
0.7
314
Normal
0.7
728
Normal
0.6
715
Tumor
0.6
523
Tumor
0.6
957
Tumor
0.6
367
Tumor
0.6
698
Normal
0.6
474
Normal
0.6
137
Tumor
0.6
214
Normal
0.6
342
Normal
0.5
312
Normal
0.5
746
Normal
0.5
518
Normal
0.4
463
Tumor
0.4
462
Normal
0.4
472
Normal
0.4
355
Tumor
0.4
878
Normal
0.4
492
Normal
0.4
617
Tumor
0.4
866
Normal
0.4
222
Normal
0.4
618
Normal
0.4
481
Tumor
0.4
862
Normal
0.4
351
Tumor
0.3
232
Normal
0.3
426
Normal
0.3
131
Tumor
0.3
413
Tumor
0.3
126
Normal
0.3
283
Tumor
0.3
358
Normal
0.3
738
Normal
0.3
218
Normal
0.3
881
Tumor
0.3
864
Normal
0.3
452
Normal
0.3
723
Tumor
0.3
111
Normal
0.3
1016
Normal
0.3
484
Normal
0.3
817
Tumor
0.3
142
Normal
0.3
1022
Normal
0.3
422
Normal
0.3
952
Normal
0.3
478
Normal
0.3
925
Tumor
0.3
332
Normal
0.2
211
Tumor
0.2
516
Normal
0.2
744
Normal
0.2
937
Tumor
0.2
113
Tumor
0.2
141
Tumor
0.2
743
Tumor
0.2
538
Normal
0.2
132
Normal
0.2
258
Normal
0.2
1014
Normal
0.2
493
Tumor
0.2
482
Normal
0.2
914
Normal
0.2
412
Normal
0.2
966
Normal
0.2
344
Normal
0.2
1044
Normal
0.2
146
Normal
0.2
327
Tumor
0.2
1028
Normal
0.2
268
Normal
0.2
911
Tumor
0.2
162
Normal
0.2
981
Tumor
0.2
535
Tumor
0.2
564
Normal
0.2
394
Normal
0.2
982
Normal
0.2
161
Tumor
0.2
1026
Normal
0.2
196
Normal
0.2
494
Normal
0.1
448
Normal
0.1
356
Normal
0.1
446
Normal
0.1
536
Normal
0.1
186
Normal
0.1
331
Tumor
0.1
388
Normal
0.1
192
Normal
0.1
877
Tumor
0.1
785
Tumor
0.1
172
Normal
0.1
921
Tumor
0.1
114
Normal
0.1
124
Normal
0.1
868
Normal
0.1
756
Normal
0.1
661
Tumor
0.1
376
Normal
0.1
861
Tumor
0.1
874
Normal
0.1
778
Normal
0.1
392
Normal
0.1
572
Normal
0.1
816
Normal
0.1
571
Tumor
0.1
742
Normal
0.1
395
Tumor
0.1
497
Tumor
0.1
984
Normal
0.0
227
Tumor
0.0
136
Normal
0.0
924
Normal
0.0
272
Normal
0.0
1015
Tumor
0.0
148
Normal
0.0
865
Tumor
0.0
546
Normal
0.0
558
Normal
0.0
545
Tumor
0.0
386
Normal
0.0
447
Tumor
0.0
352
Normal
0.0
671
Tumor
0.0
434
Normal
0.0
852
Normal
0.0
445
Tumor
0.0
145
Tumor
0.0
648
Normal
0.0
978
Normal
0.0
923
Tumor
0.0
537
Tumor
0.0
213
Tumor
0.0
467
Tumor
0.0
471
Tumor
0.0
883
Tumor
0.0
858
Normal
0.0
737
Tumor
0.0
664
Normal
0.0
636
Normal
0.0
1031
Tumor
0.0
343
Tumor
0.0
524
Normal
0.0
286
Normal
0.0
217
Tumor
0.0
672
Normal
-0.1
917
Tumor
-0.1
851
Tumor
-0.1
968
Normal
-0.1
514
Normal
-0.1
662
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
713
Tumor
-0.1
468
Normal
-0.1
262
Normal
-0.1
916
Normal
-0.1
464
Normal
-0.1
396
Normal
-0.1
138
Normal
-0.1
574
Normal
-0.1
568
Normal
-0.1
915
Tumor
-0.1
362
Normal
-0.1
1046
Normal
-0.1
526
Normal
-0.1
391
Tumor
-0.1
261
Tumor
-0.1
436
Normal
-0.1
195
Tumor
-0.1
277
Tumor
-0.1
491
Tumor
-0.1
366
Normal
-0.2
188
Normal
-0.2
191
Tumor
-0.2
461
Tumor
-0.2
824
Normal
-0.2
125
Tumor
-0.2
1032
Normal
-0.2
528
Normal
-0.2
361
Tumor
-0.2
1042
Normal
-0.2
267
Tumor
-0.2
1043
Tumor
-0.2
488
Normal
-0.2
873
Tumor
-0.2
938
Normal
-0.2
416
Normal
-0.2
456
Normal
-0.2
557
Tumor
-0.2
975
Tumor
-0.2
428
Normal
-0.2
944
Normal
-0.2
224
Normal
-0.2
487
Tumor
-0.2
313
Tumor
-0.2
271
Tumor
-0.2
328
Normal
-0.2
953
Tumor
-0.2
212
Normal
-0.2
444
Normal
-0.2
473
Tumor
-0.2
455
Tumor
-0.2
1021
Tumor
-0.2
918
Normal
-0.2
414
Normal
-0.2
432
Normal
-0.3
368
Normal
-0.3
964
Normal
-0.3
818
Normal
-0.3
951
Tumor
-0.3
724
Normal
-0.3
714
Normal
-0.3
956
Normal
-0.3
696
Normal
-0.3
573
Tumor
-0.3
385
Tumor
-0.3
955
Tumor
-0.3
1027
Tumor
-0.3
364
Normal
-0.3
976
Normal
-0.3
534
Normal
-0.3
465
Tumor
-0.3
451
Tumor
-0.3
745
Tumor
-0.4
354
Normal
-0.4
284
Normal
-0.4
424
Normal
-0.4
393
Tumor
-0.4
185
Tumor
-0.4
943
Tumor
-0.4
357
Tumor
-0.4
553
Tumor
-0.4
958
Normal
-0.4
716
Normal
-0.4
926
Normal
-0.4
127
Tumor
-0.4
1041
Tumor
-0.4
721
Tumor
-0.4
353
Tumor
-0.4
697
Tumor
-0.5
628
Normal
-0.5
135
Tumor
-0.5
967
Tumor
-0.5
375
Tumor
-0.5
913
Tumor
-0.5
498
Normal
-0.5
616
Normal
-0.5
882
Normal
-0.5
527
Tumor
-0.5
443
Tumor
-0.5
635
Tumor
-0.5
686
Normal
-0.5
147
Tumor
-0.5
823
Tumor
-0.5
666
Normal
-0.5
814
Normal
-0.5
525
Tumor
-0.5
415
Tumor
-0.5
187
Tumor
-0.5
867
Tumor
-0.5
813
Tumor
-0.5
963
Tumor
-0.5
647
Tumor
-0.5
341
Tumor
-0.5
387
Tumor
-0.5
695
Tumor
-0.6
722
Normal
-0.6
567
Tumor
-0.6
1013
Tumor
-0.6
311
Tumor
-0.6
483
Tumor
-0.6
221
Tumor
-0.6
663
Tumor
-0.6
922
Normal
-0.6
954
Normal
-0.6
425
Tumor
-0.6
685
Tumor
-0.6
421
Tumor
-0.7
641
Tumor
-0.7
857
Tumor
-0.7
257
Tumor
-0.7
427
Tumor
-0.7
912
Normal
-0.7
433
Tumor
-0.7
1045
Tumor
-0.7
563
Tumor
-0.7
977
Tumor
-0.7
863
Tumor
-0.7
297
Tumor
-0.7
515
Tumor
-0.7
533
Tumor
-0.8
365
Tumor
-0.8
431
Tumor
-0.8
112
Tumor
-0.8
741
Tumor
-0.8
665
Tumor
-0.8
383
Tumor
-0.9
477
Tumor
-0.9
384
Normal
-0.9
231
Tumor
-0.9
435
Tumor
-0.9
884
Normal
-0.9
627
Tumor
-0.9
423
Tumor
-1.0
786
Normal
-1.0
513
Tumor
-1.0
777
Tumor
-1.1
615
Tumor
-1.2
171
Tumor
-1.2
411
Tumor
-1.4
123
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
