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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PALLD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PALLD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
231
Samples
Sample
Description
TPM
DO45175
0 years, male, NA, stage:2, alive, 1140 days
73.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
70.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
63.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
54.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
36.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.4
421
Tumor
1.3
823
Tumor
1.3
455
Tumor
1.3
311
Tumor
1.3
817
Tumor
1.3
535
Tumor
1.2
697
Tumor
1.1
536
Normal
1.1
355
Tumor
1.1
327
Tumor
1.0
917
Tumor
1.0
975
Tumor
1.0
881
Tumor
1.0
883
Tumor
1.0
185
Tumor
1.0
427
Tumor
1.0
297
Tumor
0.9
943
Tumor
0.9
715
Tumor
0.9
444
Normal
0.9
375
Tumor
0.8
913
Tumor
0.8
911
Tumor
0.8
545
Tumor
0.8
385
Tumor
0.8
213
Tumor
0.8
383
Tumor
0.7
525
Tumor
0.7
141
Tumor
0.7
447
Tumor
0.7
498
Normal
0.7
223
Tumor
0.6
1015
Tumor
0.6
492
Normal
0.6
814
Normal
0.6
563
Tumor
0.5
483
Tumor
0.5
192
Normal
0.5
538
Normal
0.5
937
Tumor
0.5
963
Tumor
0.5
852
Normal
0.5
461
Tumor
0.5
187
Tumor
0.5
283
Tumor
0.5
982
Normal
0.5
916
Normal
0.5
958
Normal
0.5
145
Tumor
0.5
572
Normal
0.5
137
Tumor
0.4
161
Tumor
0.4
195
Tumor
0.4
478
Normal
0.4
857
Tumor
0.4
524
Normal
0.4
363
Tumor
0.4
923
Tumor
0.4
467
Tumor
0.4
493
Tumor
0.4
813
Tumor
0.4
1041
Tumor
0.4
1045
Tumor
0.4
415
Tumor
0.4
861
Tumor
0.3
191
Tumor
0.3
113
Tumor
0.3
785
Tumor
0.3
343
Tumor
0.3
915
Tumor
0.3
921
Tumor
0.3
267
Tumor
0.3
671
Tumor
0.3
448
Normal
0.3
354
Normal
0.3
537
Tumor
0.3
365
Tumor
0.2
925
Tumor
0.2
451
Tumor
0.2
516
Normal
0.2
1028
Normal
0.2
433
Tumor
0.2
617
Tumor
0.2
268
Normal
0.2
364
Normal
0.2
473
Tumor
0.2
685
Tumor
0.2
863
Tumor
0.2
434
Normal
0.2
874
Normal
0.2
672
Normal
0.1
463
Tumor
0.1
135
Tumor
0.1
361
Tumor
0.1
924
Normal
0.1
727
Tumor
0.1
344
Normal
0.1
284
Normal
0.1
277
Tumor
0.1
224
Normal
0.1
721
Tumor
0.1
716
Normal
0.1
124
Normal
0.1
851
Tumor
0.1
665
Tumor
0.1
867
Tumor
0.1
491
Tumor
0.1
641
Tumor
0.1
331
Tumor
0.1
1044
Normal
0.1
884
Normal
0.0
395
Tumor
0.0
474
Normal
0.0
744
Normal
0.0
647
Tumor
0.0
968
Normal
0.0
976
Normal
0.0
188
Normal
0.0
557
Tumor
0.0
642
Normal
0.0
816
Normal
0.0
627
Tumor
0.0
384
Normal
0.0
386
Normal
0.0
882
Normal
0.0
954
Normal
0.0
696
Normal
0.0
818
Normal
0.0
978
Normal
0.0
468
Normal
-0.1
228
Normal
-0.1
866
Normal
-0.1
918
Normal
-0.1
922
Normal
-0.1
1032
Normal
-0.1
1042
Normal
-0.1
573
Tumor
-0.1
953
Tumor
-0.1
126
Normal
-0.1
713
Tumor
-0.1
471
Tumor
-0.1
528
Normal
-0.1
146
Normal
-0.1
341
Tumor
-0.1
558
Normal
-0.1
984
Normal
-0.1
142
Normal
-0.1
214
Normal
-0.1
362
Normal
-0.1
574
Normal
-0.1
387
Tumor
-0.1
412
Normal
-0.1
983
Tumor
-0.1
312
Normal
-0.1
952
Normal
-0.1
416
Normal
-0.1
553
Tumor
-0.2
956
Normal
-0.2
878
Normal
-0.2
497
Tumor
-0.2
218
Normal
-0.2
724
Normal
-0.2
666
Normal
-0.2
868
Normal
-0.2
514
Normal
-0.2
686
Normal
-0.2
368
Normal
-0.2
394
Normal
-0.2
515
Tumor
-0.2
786
Normal
-0.2
636
Normal
-0.2
366
Normal
-0.2
392
Normal
-0.2
212
Normal
-0.2
388
Normal
-0.2
533
Tumor
-0.2
546
Normal
-0.2
472
Normal
-0.2
413
Tumor
-0.2
527
Tumor
-0.3
977
Tumor
-0.3
494
Normal
-0.3
966
Normal
-0.3
938
Normal
-0.3
353
Tumor
-0.3
278
Normal
-0.3
628
Normal
-0.3
138
Normal
-0.3
698
Normal
-0.3
332
Normal
-0.3
778
Normal
-0.3
422
Normal
-0.3
466
Normal
-0.3
957
Tumor
-0.3
1022
Normal
-0.3
456
Normal
-0.3
526
Normal
-0.3
314
Normal
-0.3
862
Normal
-0.3
567
Tumor
-0.3
518
Normal
-0.3
914
Normal
-0.3
262
Normal
-0.3
352
Normal
-0.3
396
Normal
-0.3
136
Normal
-0.3
662
Normal
-0.3
714
Normal
-0.3
664
Normal
-0.3
425
Tumor
-0.4
488
Normal
-0.4
423
Tumor
-0.4
484
Normal
-0.4
944
Normal
-0.4
367
Tumor
-0.4
328
Normal
-0.4
912
Normal
-0.4
615
Tumor
-0.4
1046
Normal
-0.4
877
Tumor
-0.4
464
Normal
-0.4
745
Tumor
-0.4
1016
Normal
-0.4
286
Normal
-0.4
616
Normal
-0.4
487
Tumor
-0.4
298
Normal
-0.4
1026
Normal
-0.4
926
Normal
-0.4
1014
Normal
-0.4
722
Normal
-0.4
376
Normal
-0.4
618
Normal
-0.4
132
Normal
-0.4
513
Tumor
-0.5
477
Tumor
-0.5
864
Normal
-0.5
431
Tumor
-0.5
351
Tumor
-0.5
217
Tumor
-0.5
231
Tumor
-0.5
257
Tumor
-0.5
858
Normal
-0.5
873
Tumor
-0.5
196
Normal
-0.5
428
Normal
-0.5
824
Normal
-0.5
424
Normal
-0.5
443
Tumor
-0.5
222
Normal
-0.5
523
Tumor
-0.5
313
Tumor
-0.5
738
Normal
-0.5
452
Normal
-0.5
391
Tumor
-0.5
414
Normal
-0.5
741
Tumor
-0.5
462
Normal
-0.6
554
Normal
-0.6
393
Tumor
-0.6
746
Normal
-0.6
723
Tumor
-0.6
965
Tumor
-0.6
272
Normal
-0.6
1013
Tumor
-0.6
426
Normal
-0.6
742
Normal
-0.6
186
Normal
-0.6
127
Tumor
-0.6
342
Normal
-0.6
756
Normal
-0.6
356
Normal
-0.6
221
Tumor
-0.6
271
Tumor
-0.6
964
Normal
-0.6
232
Normal
-0.6
564
Normal
-0.6
261
Tumor
-0.6
481
Tumor
-0.6
517
Tumor
-0.7
148
Normal
-0.7
865
Tumor
-0.7
568
Normal
-0.7
446
Normal
-0.7
728
Normal
-0.7
695
Tumor
-0.7
432
Normal
-0.7
465
Tumor
-0.7
111
Normal
-0.7
534
Normal
-0.7
162
Normal
-0.7
1025
Tumor
-0.7
258
Normal
-0.8
482
Normal
-0.8
777
Tumor
-0.8
955
Tumor
-0.8
663
Tumor
-0.8
661
Tumor
-0.8
114
Normal
-0.8
737
Tumor
-0.8
648
Normal
-0.8
358
Normal
-0.8
172
Normal
-0.8
171
Tumor
-0.9
128
Normal
-0.9
436
Normal
-0.9
147
Tumor
-0.9
1031
Tumor
-0.9
435
Tumor
-0.9
743
Tumor
-0.9
981
Tumor
-1.0
755
Tumor
-1.0
635
Tumor
-1.0
815
Tumor
-1.0
445
Tumor
-1.1
112
Tumor
-1.1
1043
Tumor
-1.1
967
Tumor
-1.2
1027
Tumor
-1.2
285
Tumor
-1.2
951
Tumor
-1.2
1021
Tumor
-1.2
125
Tumor
-1.2
411
Tumor
-1.2
227
Tumor
-1.3
571
Tumor
-1.3
123
Tumor
-1.4
357
Tumor
-1.4
131
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
