We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
367.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
351.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
283.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
241.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
213.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
210.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
208.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
198.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
197.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
195.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
182.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
180.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
179.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
174.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
171.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
168.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
168.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
168.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
167.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
166.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
160.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
160.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
159.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
159.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
157.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
152.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
152.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
150.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
149.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
147.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
146.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
145.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
141.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
140.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
140.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
139.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
138.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
136.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
136.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
133.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
133.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
132.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
132.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
130.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
129.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
128.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
127.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
126.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
125.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
124.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
123.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
122.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
121.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
121.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
121.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
119.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
118.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
116.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
116.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
116.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
116.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
116.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
115.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
115.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
115.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
114.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
114.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
112.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
111.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
110.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
109.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
109.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
108.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
108.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
107.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
107.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
106.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
106.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
105.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
104.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
104.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
103.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
103.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
103.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
102.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
102.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
101.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
99.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
99.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
99.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
99.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
99.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
99.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
98.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
97.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
97.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
97.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
97.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
96.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
96.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
96.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
94.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
94.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
94.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
94.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
94.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
94.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
93.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
93.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
93.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
92.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
92.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
92.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
92.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
91.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
91.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
91.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
90.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
90.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
90.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
90.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
90.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
89.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
89.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
89.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
88.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
88.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
88.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
88.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
87.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
87.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
87.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
87.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
87.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
87.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
87.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
87.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
87.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
86.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
86.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
85.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
85.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
84.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
83.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
83.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
83.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
83.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
83.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
83.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
82.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
81.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
81.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
81.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
80.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
80.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
80.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
80.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
79.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
79.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
79.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
79.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
79.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
78.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
77.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
77.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
77.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
76.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
76.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
76.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
76.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
76.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
75.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
75.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
75.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
74.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
74.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
72.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
72.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
72.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
71.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
71.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
71.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
71.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
70.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
70.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
70.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
69.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
69.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
69.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
69.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
68.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
68.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
68.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
68.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
67.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
66.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
66.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
66.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
65.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
65.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
65.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
65.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
65.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
64.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
64.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
63.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
63.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
63.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
62.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
62.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
62.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
62.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
61.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
60.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
60.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
59.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
59.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
59.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
56.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
56.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
55.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
55.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
55.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
54.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
54.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
54.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
51.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
51.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
51.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
50.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
50.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
49.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
47.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
47.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
44.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
42.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
40.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.7
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
243.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
218.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
202.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
185.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
183.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
169.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
158.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
156.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
152.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
150.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
142.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
136.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
133.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
133.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
124.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
122.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
119.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
119.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
116.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
115.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
114.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
113.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
113.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
113.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
109.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
109.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
108.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
108.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
107.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
106.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
105.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
105.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
104.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
103.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
102.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
102.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
99.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
98.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
98.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
96.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
96.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
95.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
95.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
94.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
93.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
92.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
92.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
92.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
91.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
90.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
90.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
90.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
89.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
89.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
88.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
87.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
87.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
87.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
86.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
86.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
85.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
85.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
85.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
85.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
85.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
83.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
82.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
81.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
81.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
80.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
80.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
79.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
78.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
78.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
78.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
77.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
77.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
77.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
76.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
76.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
75.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
74.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
73.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
73.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
73.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
73.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
73.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
73.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
72.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
72.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
72.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
72.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
71.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
71.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
70.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
69.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
69.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
68.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
68.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
68.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
67.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
67.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
66.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
66.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
66.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
66.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
66.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
65.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
64.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
64.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
63.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
62.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
61.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
60.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
60.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
60.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
59.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
59.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
59.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
59.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
59.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
58.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
58.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
57.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
57.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
56.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
55.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
55.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
55.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
55.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
55.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
51.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
50.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
48.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
47.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
42.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
755
Tumor
1.1
445
Tumor
1.1
313
Tumor
0.7
915
Tumor
0.7
921
Tumor
0.7
641
Tumor
0.6
967
Tumor
0.6
553
Tumor
0.5
277
Tumor
0.5
423
Tumor
0.5
911
Tumor
0.5
857
Tumor
0.5
513
Tumor
0.5
195
Tumor
0.4
572
Normal
0.4
493
Tumor
0.4
221
Tumor
0.4
494
Normal
0.4
863
Tumor
0.4
817
Tumor
0.4
1041
Tumor
0.4
393
Tumor
0.4
171
Tumor
0.4
138
Normal
0.4
1045
Tumor
0.4
851
Tumor
0.4
278
Normal
0.4
861
Tumor
0.3
357
Tumor
0.3
137
Tumor
0.3
257
Tumor
0.3
365
Tumor
0.3
743
Tumor
0.3
223
Tumor
0.3
662
Normal
0.3
715
Tumor
0.3
132
Normal
0.3
268
Normal
0.3
187
Tumor
0.3
685
Tumor
0.3
955
Tumor
0.3
188
Normal
0.3
354
Normal
0.3
314
Normal
0.3
213
Tumor
0.3
392
Normal
0.3
816
Normal
0.3
312
Normal
0.3
813
Tumor
0.3
954
Normal
0.3
444
Normal
0.3
258
Normal
0.3
272
Normal
0.3
452
Normal
0.3
366
Normal
0.3
332
Normal
0.3
191
Tumor
0.3
172
Normal
0.3
864
Normal
0.3
422
Normal
0.3
672
Normal
0.3
368
Normal
0.3
147
Tumor
0.3
232
Normal
0.3
376
Normal
0.3
148
Normal
0.3
814
Normal
0.2
564
Normal
0.2
721
Tumor
0.2
327
Tumor
0.2
636
Normal
0.2
362
Normal
0.2
1021
Tumor
0.2
862
Normal
0.2
914
Normal
0.2
227
Tumor
0.2
912
Normal
0.2
271
Tumor
0.2
395
Tumor
0.2
874
Normal
0.2
488
Normal
0.2
434
Normal
0.2
466
Normal
0.2
212
Normal
0.2
1015
Tumor
0.2
196
Normal
0.2
615
Tumor
0.2
514
Normal
0.2
574
Normal
0.2
136
Normal
0.2
648
Normal
0.2
1028
Normal
0.2
671
Tumor
0.2
463
Tumor
0.2
635
Tumor
0.2
568
Normal
0.2
727
Tumor
0.2
866
Normal
0.2
616
Normal
0.2
978
Normal
0.2
468
Normal
0.2
786
Normal
0.2
162
Normal
0.2
467
Tumor
0.2
384
Normal
0.2
713
Tumor
0.2
464
Normal
0.2
353
Tumor
0.2
922
Normal
0.1
968
Normal
0.1
411
Tumor
0.1
975
Tumor
0.1
356
Normal
0.1
492
Normal
0.1
125
Tumor
0.1
426
Normal
0.1
387
Tumor
0.1
981
Tumor
0.1
944
Normal
0.1
261
Tumor
0.1
483
Tumor
0.1
414
Normal
0.1
114
Normal
0.1
484
Normal
0.1
224
Normal
0.1
963
Tumor
0.1
412
Normal
0.1
642
Normal
0.1
262
Normal
0.1
298
Normal
0.1
342
Normal
0.1
563
Tumor
0.1
818
Normal
0.1
1043
Tumor
0.1
852
Normal
0.1
925
Tumor
0.1
1046
Normal
0.1
698
Normal
0.1
528
Normal
0.1
516
Normal
0.1
723
Tumor
0.1
161
Tumor
0.1
957
Tumor
0.1
884
Normal
0.1
868
Normal
0.1
383
Tumor
0.1
722
Normal
0.1
1016
Normal
0.1
515
Tumor
0.1
778
Normal
0.1
534
Normal
0.1
1022
Normal
0.1
882
Normal
0.1
984
Normal
0.1
471
Tumor
0.1
628
Normal
0.1
867
Tumor
0.1
396
Normal
0.1
815
Tumor
0.1
394
Normal
0.1
824
Normal
0.1
214
Normal
0.1
618
Normal
0.1
124
Normal
0.1
696
Normal
0.1
228
Normal
0.1
858
Normal
0.1
976
Normal
0.1
977
Tumor
0.1
647
Tumor
0.1
881
Tumor
0.1
916
Normal
0.1
222
Normal
0.0
433
Tumor
0.0
665
Tumor
0.0
526
Normal
0.0
938
Normal
0.0
424
Normal
0.0
284
Normal
0.0
128
Normal
0.0
918
Normal
0.0
558
Normal
0.0
664
Normal
0.0
738
Normal
0.0
518
Normal
0.0
498
Normal
0.0
878
Normal
0.0
431
Tumor
0.0
557
Tumor
0.0
666
Normal
0.0
436
Normal
0.0
951
Tumor
0.0
956
Normal
0.0
1026
Normal
0.0
283
Tumor
0.0
982
Normal
0.0
926
Normal
0.0
1042
Normal
0.0
742
Normal
0.0
686
Normal
0.0
388
Normal
0.0
661
Tumor
0.0
465
Tumor
0.0
571
Tumor
0.0
937
Tumor
0.0
358
Normal
0.0
958
Normal
0.0
785
Tumor
0.0
186
Normal
0.0
924
Normal
0.0
1014
Normal
0.0
728
Normal
0.0
142
Normal
0.0
617
Tumor
0.0
432
Normal
0.0
744
Normal
0.0
435
Tumor
0.0
231
Tumor
0.0
746
Normal
0.0
146
Normal
0.0
455
Tumor
0.0
714
Normal
0.0
517
Tumor
0.0
427
Tumor
0.0
554
Normal
0.0
756
Normal
0.0
953
Tumor
0.0
267
Tumor
0.0
286
Normal
0.0
1027
Tumor
-0.1
1044
Normal
-0.1
546
Normal
-0.1
873
Tumor
-0.1
456
Normal
-0.1
952
Normal
-0.1
913
Tumor
-0.1
218
Normal
-0.1
375
Tumor
-0.1
448
Normal
-0.1
428
Normal
-0.1
446
Normal
-0.1
462
Normal
-0.1
361
Tumor
-0.1
328
Normal
-0.1
538
Normal
-0.1
524
Normal
-0.1
741
Tumor
-0.1
131
Tumor
-0.1
351
Tumor
-0.1
966
Normal
-0.1
477
Tumor
-0.1
478
Normal
-0.1
185
Tumor
-0.1
1032
Normal
-0.1
865
Tumor
-0.1
415
Tumor
-0.1
425
Tumor
-0.1
311
Tumor
-0.1
461
Tumor
-0.1
352
Normal
-0.1
341
Tumor
-0.1
474
Normal
-0.1
745
Tumor
-0.1
192
Normal
-0.1
127
Tumor
-0.1
113
Tumor
-0.1
413
Tumor
-0.1
344
Normal
-0.1
536
Normal
-0.2
217
Tumor
-0.2
716
Normal
-0.2
877
Tumor
-0.2
443
Tumor
-0.2
472
Normal
-0.2
573
Tumor
-0.2
355
Tumor
-0.2
421
Tumor
-0.2
111
Normal
-0.2
297
Tumor
-0.2
126
Normal
-0.2
964
Normal
-0.2
386
Normal
-0.2
923
Tumor
-0.2
663
Tumor
-0.2
497
Tumor
-0.2
527
Tumor
-0.2
491
Tumor
-0.2
943
Tumor
-0.2
416
Normal
-0.2
1031
Tumor
-0.2
145
Tumor
-0.2
983
Tumor
-0.2
737
Tumor
-0.2
627
Tumor
-0.3
823
Tumor
-0.3
343
Tumor
-0.3
447
Tumor
-0.3
695
Tumor
-0.3
1025
Tumor
-0.3
451
Tumor
-0.3
1013
Tumor
-0.3
481
Tumor
-0.3
523
Tumor
-0.3
724
Normal
-0.3
141
Tumor
-0.3
367
Tumor
-0.3
364
Normal
-0.4
391
Tumor
-0.4
777
Tumor
-0.4
697
Tumor
-0.4
545
Tumor
-0.4
363
Tumor
-0.4
331
Tumor
-0.5
535
Tumor
-0.5
385
Tumor
-0.5
537
Tumor
-0.5
917
Tumor
-0.6
285
Tumor
-0.6
211
Tumor
-0.6
112
Tumor
-0.6
123
Tumor
-0.6
533
Tumor
-0.6
883
Tumor
-0.6
487
Tumor
-0.6
482
Normal
-0.7
525
Tumor
-0.8
135
Tumor
-0.8
567
Tumor
-1.0
965
Tumor
-1.0
473
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
