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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
69.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
231
Samples
Sample
Description
TPM
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
516
Normal
1.3
358
Normal
0.8
514
Normal
0.8
354
Normal
0.8
957
Tumor
0.7
497
Tumor
0.7
127
Tumor
0.7
943
Tumor
0.7
741
Tumor
0.7
823
Tumor
0.7
128
Normal
0.7
126
Normal
0.6
125
Tumor
0.6
123
Tumor
0.6
724
Normal
0.6
352
Normal
0.6
727
Tumor
0.6
515
Tumor
0.6
513
Tumor
0.6
467
Tumor
0.6
427
Tumor
0.5
526
Normal
0.5
114
Normal
0.5
663
Tumor
0.5
344
Normal
0.5
132
Normal
0.5
138
Normal
0.5
353
Tumor
0.5
434
Normal
0.5
533
Tumor
0.5
395
Tumor
0.5
1013
Tumor
0.5
446
Normal
0.5
428
Normal
0.5
447
Tumor
0.5
351
Tumor
0.5
384
Normal
0.5
136
Normal
0.4
343
Tumor
0.4
142
Normal
0.4
111
Normal
0.4
356
Normal
0.4
938
Normal
0.4
146
Normal
0.4
444
Normal
0.4
328
Normal
0.4
857
Tumor
0.4
411
Tumor
0.4
124
Normal
0.4
723
Tumor
0.4
342
Normal
0.4
1046
Normal
0.4
465
Tumor
0.4
914
Normal
0.4
448
Normal
0.3
958
Normal
0.3
824
Normal
0.3
865
Tumor
0.3
375
Tumor
0.3
445
Tumor
0.3
432
Normal
0.3
113
Tumor
0.3
816
Normal
0.3
915
Tumor
0.3
357
Tumor
0.3
422
Normal
0.3
647
Tumor
0.3
672
Normal
0.3
742
Normal
0.3
648
Normal
0.3
431
Tumor
0.3
984
Normal
0.3
364
Normal
0.3
451
Tumor
0.3
493
Tumor
0.3
213
Tumor
0.3
851
Tumor
0.3
1016
Normal
0.3
362
Normal
0.3
737
Tumor
0.3
535
Tumor
0.3
852
Normal
0.3
976
Normal
0.3
491
Tumor
0.3
284
Normal
0.2
786
Normal
0.2
964
Normal
0.2
868
Normal
0.2
327
Tumor
0.2
955
Tumor
0.2
211
Tumor
0.2
756
Normal
0.2
482
Normal
0.2
414
Normal
0.2
1031
Tumor
0.2
488
Normal
0.2
661
Tumor
0.2
818
Normal
0.2
423
Tumor
0.2
916
Normal
0.2
433
Tumor
0.2
137
Tumor
0.2
464
Normal
0.2
426
Normal
0.2
861
Tumor
0.2
463
Tumor
0.2
498
Normal
0.2
864
Normal
0.2
416
Normal
0.2
983
Tumor
0.2
721
Tumor
0.2
697
Tumor
0.2
1032
Normal
0.2
536
Normal
0.2
355
Tumor
0.2
662
Normal
0.2
112
Tumor
0.2
698
Normal
0.2
862
Normal
0.2
1015
Tumor
0.1
696
Normal
0.1
141
Tumor
0.1
978
Normal
0.1
368
Normal
0.1
366
Normal
0.1
977
Tumor
0.1
385
Tumor
0.1
443
Tumor
0.1
1044
Normal
0.1
743
Tumor
0.1
484
Normal
0.1
982
Normal
0.1
863
Tumor
0.1
436
Normal
0.1
923
Tumor
0.1
494
Normal
0.1
814
Normal
0.1
956
Normal
0.1
285
Tumor
0.1
867
Tumor
0.1
954
Normal
0.1
664
Normal
0.1
283
Tumor
0.1
874
Normal
0.1
1042
Normal
0.1
858
Normal
0.1
534
Normal
0.1
518
Normal
0.1
666
Normal
0.1
722
Normal
0.1
922
Normal
0.0
965
Tumor
0.0
145
Tumor
0.0
383
Tumor
0.0
472
Normal
0.0
221
Tumor
0.0
866
Normal
0.0
1041
Tumor
0.0
361
Tumor
0.0
981
Tumor
0.0
481
Tumor
0.0
728
Normal
0.0
952
Normal
0.0
778
Normal
0.0
468
Normal
0.0
937
Tumor
0.0
524
Normal
0.0
412
Normal
0.0
878
Normal
0.0
975
Tumor
0.0
715
Tumor
0.0
883
Tumor
0.0
435
Tumor
0.0
478
Normal
0.0
192
Normal
0.0
487
Tumor
0.0
424
Normal
-0.1
1014
Normal
-0.1
415
Tumor
-0.1
1022
Normal
-0.1
1043
Tumor
-0.1
545
Tumor
-0.1
713
Tumor
-0.1
224
Normal
-0.1
376
Normal
-0.1
695
Tumor
-0.1
744
Normal
-0.1
918
Normal
-0.1
944
Normal
-0.1
1028
Normal
-0.1
492
Normal
-0.1
461
Tumor
-0.1
474
Normal
-0.1
452
Normal
-0.1
462
Normal
-0.1
1026
Normal
-0.1
367
Tumor
-0.1
968
Normal
-0.1
1025
Tumor
-0.1
196
Normal
-0.1
665
Tumor
-0.1
926
Normal
-0.1
1045
Tumor
-0.1
483
Tumor
-0.1
456
Normal
-0.1
466
Normal
-0.1
341
Tumor
-0.1
924
Normal
-0.1
425
Tumor
-0.1
413
Tumor
-0.2
716
Normal
-0.2
671
Tumor
-0.2
222
Normal
-0.2
214
Normal
-0.2
286
Normal
-0.2
877
Tumor
-0.2
884
Normal
-0.2
913
Tumor
-0.2
421
Tumor
-0.2
553
Tumor
-0.2
738
Normal
-0.2
925
Tumor
-0.2
365
Tumor
-0.2
528
Normal
-0.2
966
Normal
-0.2
817
Tumor
-0.2
746
Normal
-0.2
963
Tumor
-0.2
191
Tumor
-0.2
228
Normal
-0.2
813
Tumor
-0.2
471
Tumor
-0.2
911
Tumor
-0.3
391
Tumor
-0.3
131
Tumor
-0.3
953
Tumor
-0.3
227
Tumor
-0.3
212
Normal
-0.3
217
Tumor
-0.3
525
Tumor
-0.3
392
Normal
-0.3
881
Tumor
-0.3
873
Tumor
-0.3
135
Tumor
-0.3
195
Tumor
-0.3
396
Normal
-0.3
1021
Tumor
-0.4
223
Tumor
-0.4
538
Normal
-0.4
394
Normal
-0.4
386
Normal
-0.4
777
Tumor
-0.4
546
Normal
-0.4
1027
Tumor
-0.4
785
Tumor
-0.4
686
Normal
-0.4
554
Normal
-0.4
685
Tumor
-0.4
523
Tumor
-0.4
477
Tumor
-0.4
218
Normal
-0.4
517
Tumor
-0.4
363
Tumor
-0.4
714
Normal
-0.4
882
Normal
-0.4
815
Tumor
-0.4
473
Tumor
-0.4
455
Tumor
-0.5
951
Tumor
-0.5
921
Tumor
-0.5
967
Tumor
-0.5
745
Tumor
-0.5
755
Tumor
-0.6
912
Normal
-0.6
393
Tumor
-0.6
387
Tumor
-0.7
537
Tumor
-0.8
388
Normal
-0.8
917
Tumor
-1.0
527
Tumor
-1.0
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
