HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:15.1 nTPM
GTEx:15.3 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:4.3 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040391Antibody HPA064439Antibody CAB020696
Glial cells LowLowLow
Neuronal cells MediumLowNot detected






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 15.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.6
1898 Male, age 80, left hemisphere 13.3
2148 Female, age 91, left hemisphere 12.7
2621 Female, age 67, right hemisphere 12.7
1855 Male, age 76, left hemisphere 12.6
2529 Female, age 94, left hemisphere 12.3
1911 Female, age 85, right hemisphere 12.2
Dentate gyrus
nTPM: 12.7
2530 Female, age 94, left hemisphere 19.5
2010 Male, age 76, both hemispheres 13.5
2528 Male, age 74, both hemispheres 12.3
2246 Female, age 85, both hemispheres 11.9
2531 Female, age 67, both hemispheres 9.9
1927 Female, age 91, both hemispheres 9.1
Entorhinal gyrus
nTPM: 15.1
2613 Female, age 94, left hemisphere 23.8
2117 Female, age 91, right hemisphere 15.4
2764 Male, age 80, right hemisphere 14.1
1938 Female, age 85, left hemisphere 13.2
2686 Male, age 75, right hemisphere 13.2
1787 Male, age 76, left hemisphere 10.7
Hippocampus, CA1
nTPM: 10.8
2082 Female, age 91, right hemisphere 14.7
2527 Male, age 74, both hemispheres 11.8
1873 Female, age 85, both hemispheres 11.7
2749 Male, age 80, left hemisphere 8.9
2045 Male, age 76, both hemispheres 7.1
Hippocampus, CA2
nTPM: 12.7
1963 Male, age 80, left hemisphere 16.1
2437 Female, age 94, left hemisphere 15.4
2113 Female, age 91, right hemisphere 13.1
2249 Male, age 74, both hemispheres 11.1
1940 Female, age 85, left hemisphere 10.8
1892 Male, age 76, both hemispheres 9.7
Hippocampus, CA3
nTPM: 8.8
1891 Female, age 85, both hemispheres 13.0
2861 Female, age 67, both hemispheres 10.3
1867 Male, age 76, both hemispheres 9.5
2436 Male, age 74, both hemispheres 8.5
2137 Male, age 80, left hemisphere 7.6
2620 Female, age 94, left hemisphere 3.9
Parahippocampal cortex
nTPM: 10.9
2692 Male, age 74, both hemispheres 13.8
1990 Female, age 91, right hemisphere 12.2
2532 Female, age 72, left hemisphere 11.9
1933 Female, age 85, both hemispheres 11.4
2245 Female, age 91, both hemispheres 10.7
2018 Male, age 76, both hemispheres 10.4
2622 Female, age 67, right hemisphere 9.9
1850 Male, age 80, both hemispheres 9.8
2250 Female, age 67, right hemisphere 9.6
2693 Female, age 94, both hemispheres 9.2
Perirhinal gyrus
nTPM: 9.1
2848 Male, age 76, right hemisphere 10.9
1847 Female, age 91, left hemisphere 10.0
2521 Female, age 94, right hemisphere 9.3
1794 Male, age 80, right hemisphere 8.1
1841 Female, age 85, right hemisphere 7.1
Subiculum
nTPM: 15.1
1901 Male, age 80, both hemispheres 16.7
2438 Female, age 94, left hemisphere 15.5
1977 Female, age 85, both hemispheres 15.2
2729 Female, age 91, right hemisphere 14.7
2042 Male, age 76, both hemispheres 14.4
2619 Male, age 74, both hemispheres 14.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 15.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.3
Samples: 197

Max nTPM: 48.9
Min nTPM: 3.7
Std nTPM: 6.5
Median nTPM: 14.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 48.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 42.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 33.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 31.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 30.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 30.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 27.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 26.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.8
FF:10153-102I9 76 years, female 21.3
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 19.8
Pig sample Sample description nTPM
Subiculum
nTPM: 12.4
Samples: 4

Max nTPM: 17.1
Min nTPM: 8.5
Sample A Female 17.1
Sample B Female 11.9
Sample C Male 12.1
Sample D Male 8.5
Dorsal hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 12.0
Sample A Female 26.7
Sample B Female 26.3
Sample C Male 14.3
Sample D Male 12.0
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.5
Sample A Female 7.8
Sample B Female 8.4
Sample C Male 10.4
Sample D Male 7.5
Ventral hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 11.3
Sample A Female 12.8
Sample B Female 11.3
Sample C Male 13.3
Sample D Male 26.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 4.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.3
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.4
Sample A Male 5.1
Sample B Male 4.2
Sample C Female 4.5
Sample D Female 3.4
Hippocampal formation
nTPM: 4.1
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.4
Sample A Male 3.4
Sample B Male 5.0
Sample C Female 3.9
Sample D Female 4.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
678695 Antisense, RP_040914_02_E06, Mouse strain C57BL/6J (56 days, male) 0.4

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