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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMG2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
97.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
96.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
92.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
87.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
77.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
74.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
72.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
71.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
71.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
69.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
68.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
68.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
68.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
64.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
63.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
63.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
59.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
59.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
55.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
55.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
53.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
50.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
49.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
48.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
48.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
47.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
47.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
46.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
45.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
43.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
43.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
43.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
41.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
39.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
39.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMG2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.8
Number of samples
231
Samples
Sample
Description
TPM
DO48697
0 years, female, NA, stage:2, dead, 810 days
87.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
87.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
84.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
83.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
76.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
76.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
65.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
65.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
65.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
63.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
61.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
60.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
59.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
56.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
55.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
55.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
55.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
54.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
53.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
53.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
50.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
50.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
50.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
50.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
49.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
49.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
48.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
46.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
45.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
45.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
44.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
41.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
38.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.3
1013
Tumor
1.2
951
Tumor
1.1
965
Tumor
0.9
957
Tumor
0.9
695
Tumor
0.9
911
Tumor
0.9
515
Tumor
0.8
411
Tumor
0.8
517
Tumor
0.8
953
Tumor
0.8
1021
Tumor
0.8
537
Tumor
0.8
465
Tumor
0.8
573
Tumor
0.8
865
Tumor
0.8
313
Tumor
0.7
1027
Tumor
0.7
815
Tumor
0.7
445
Tumor
0.7
327
Tumor
0.7
647
Tumor
0.7
257
Tumor
0.7
355
Tumor
0.7
391
Tumor
0.6
737
Tumor
0.6
777
Tumor
0.5
967
Tumor
0.5
981
Tumor
0.5
567
Tumor
0.5
483
Tumor
0.5
513
Tumor
0.5
393
Tumor
0.5
283
Tumor
0.5
663
Tumor
0.4
473
Tumor
0.4
131
Tumor
0.4
977
Tumor
0.4
137
Tumor
0.4
1031
Tumor
0.4
923
Tumor
0.4
615
Tumor
0.4
863
Tumor
0.4
557
Tumor
0.4
171
Tumor
0.4
861
Tumor
0.4
983
Tumor
0.3
357
Tumor
0.3
497
Tumor
0.3
553
Tumor
0.3
785
Tumor
0.3
387
Tumor
0.3
525
Tumor
0.3
425
Tumor
0.3
431
Tumor
0.2
685
Tumor
0.2
1041
Tumor
0.2
724
Normal
0.2
1025
Tumor
0.2
331
Tumor
0.2
361
Tumor
0.2
817
Tumor
0.2
915
Tumor
0.2
125
Tumor
0.2
755
Tumor
0.2
523
Tumor
0.2
161
Tumor
0.2
727
Tumor
0.2
415
Tumor
0.2
925
Tumor
0.2
423
Tumor
0.2
627
Tumor
0.2
921
Tumor
0.2
435
Tumor
0.1
741
Tumor
0.1
341
Tumor
0.1
227
Tumor
0.1
952
Normal
0.1
862
Normal
0.1
427
Tumor
0.1
342
Normal
0.1
365
Tumor
0.1
714
Normal
0.1
311
Tumor
0.1
745
Tumor
0.1
746
Normal
0.1
461
Tumor
0.1
211
Tumor
0.1
527
Tumor
0.1
493
Tumor
0.1
487
Tumor
0.0
363
Tumor
0.0
1026
Normal
0.0
956
Normal
0.0
491
Tumor
0.0
481
Tumor
0.0
873
Tumor
0.0
343
Tumor
0.0
356
Normal
0.0
545
Tumor
0.0
443
Tumor
0.0
1045
Tumor
0.0
867
Tumor
0.0
185
Tumor
0.0
477
Tumor
0.0
494
Normal
-0.1
128
Normal
-0.1
976
Normal
-0.1
192
Normal
-0.1
448
Normal
-0.1
113
Tumor
-0.1
351
Tumor
-0.1
878
Normal
-0.1
534
Normal
-0.1
883
Tumor
-0.1
482
Normal
-0.1
966
Normal
-0.1
526
Normal
-0.1
697
Tumor
-0.1
535
Tumor
-0.1
1022
Normal
-0.1
696
Normal
-0.1
488
Normal
-0.1
455
Tumor
-0.1
123
Tumor
-0.1
738
Normal
-0.1
385
Tumor
-0.1
536
Normal
-0.1
222
Normal
-0.1
223
Tumor
-0.1
852
Normal
-0.1
471
Tumor
-0.1
421
Tumor
-0.1
187
Tumor
-0.1
518
Normal
-0.1
533
Tumor
-0.1
924
Normal
-0.1
715
Tumor
-0.1
944
Normal
-0.1
221
Tumor
-0.1
728
Normal
-0.1
228
Normal
-0.1
938
Normal
-0.1
866
Normal
-0.1
353
Tumor
-0.1
375
Tumor
-0.1
217
Tumor
-0.1
314
Normal
-0.1
213
Tumor
-0.1
472
Normal
-0.1
1028
Normal
-0.1
413
Tumor
-0.1
816
Normal
-0.1
617
Tumor
-0.1
546
Normal
-0.1
462
Normal
-0.2
857
Tumor
-0.2
285
Tumor
-0.2
955
Tumor
-0.2
358
Normal
-0.2
196
Normal
-0.2
367
Tumor
-0.2
412
Normal
-0.2
516
Normal
-0.2
376
Normal
-0.2
195
Tumor
-0.2
484
Normal
-0.2
571
Tumor
-0.2
963
Tumor
-0.2
212
Normal
-0.2
943
Tumor
-0.2
661
Tumor
-0.2
284
Normal
-0.2
918
Normal
-0.2
395
Tumor
-0.2
362
Normal
-0.2
778
Normal
-0.2
968
Normal
-0.2
877
Tumor
-0.2
436
Normal
-0.2
368
Normal
-0.2
851
Tumor
-0.2
722
Normal
-0.2
982
Normal
-0.2
214
Normal
-0.2
463
Tumor
-0.2
1016
Normal
-0.2
312
Normal
-0.2
277
Tumor
-0.2
1015
Tumor
-0.2
278
Normal
-0.2
864
Normal
-0.2
111
Normal
-0.2
474
Normal
-0.2
328
Normal
-0.2
433
Tumor
-0.2
422
Normal
-0.2
344
Normal
-0.2
297
Tumor
-0.2
127
Tumor
-0.2
716
Normal
-0.2
1044
Normal
-0.2
271
Tumor
-0.2
478
Normal
-0.2
635
Tumor
-0.3
713
Tumor
-0.3
916
Normal
-0.3
686
Normal
-0.3
874
Normal
-0.3
913
Tumor
-0.3
332
Normal
-0.3
554
Normal
-0.3
881
Tumor
-0.3
492
Normal
-0.3
112
Tumor
-0.3
286
Normal
-0.3
428
Normal
-0.3
813
Tumor
-0.3
426
Normal
-0.3
514
Normal
-0.3
917
Tumor
-0.3
954
Normal
-0.3
124
Normal
-0.3
224
Normal
-0.3
823
Tumor
-0.3
723
Tumor
-0.3
824
Normal
-0.3
698
Normal
-0.3
447
Tumor
-0.3
261
Tumor
-0.3
818
Normal
-0.3
142
Normal
-0.3
354
Normal
-0.3
384
Normal
-0.3
416
Normal
-0.3
498
Normal
-0.3
451
Tumor
-0.3
538
Normal
-0.3
1014
Normal
-0.3
452
Normal
-0.3
272
Normal
-0.3
467
Tumor
-0.3
298
Normal
-0.3
756
Normal
-0.3
383
Tumor
-0.3
218
Normal
-0.4
232
Normal
-0.4
648
Normal
-0.4
466
Normal
-0.4
1042
Normal
-0.4
662
Normal
-0.4
1032
Normal
-0.4
352
Normal
-0.4
563
Tumor
-0.4
814
Normal
-0.4
186
Normal
-0.4
114
Normal
-0.4
984
Normal
-0.4
191
Tumor
-0.4
742
Normal
-0.4
922
Normal
-0.4
558
Normal
-0.4
424
Normal
-0.4
366
Normal
-0.4
958
Normal
-0.4
858
Normal
-0.4
978
Normal
-0.4
744
Normal
-0.4
868
Normal
-0.4
572
Normal
-0.4
975
Tumor
-0.4
964
Normal
-0.4
414
Normal
-0.4
926
Normal
-0.4
434
Normal
-0.4
1046
Normal
-0.4
568
Normal
-0.4
884
Normal
-0.5
364
Normal
-0.5
126
Normal
-0.5
392
Normal
-0.5
138
Normal
-0.5
574
Normal
-0.5
258
Normal
-0.5
386
Normal
-0.5
388
Normal
-0.5
468
Normal
-0.5
882
Normal
-0.5
136
Normal
-0.5
564
Normal
-0.5
664
Normal
-0.5
446
Normal
-0.5
141
Tumor
-0.5
524
Normal
-0.5
268
Normal
-0.5
786
Normal
-0.5
135
Tumor
-0.5
456
Normal
-0.5
396
Normal
-0.5
148
Normal
-0.5
528
Normal
-0.5
721
Tumor
-0.5
132
Normal
-0.5
914
Normal
-0.6
665
Tumor
-0.6
162
Normal
-0.6
145
Tumor
-0.6
671
Tumor
-0.6
618
Normal
-0.6
172
Normal
-0.6
642
Normal
-0.6
464
Normal
-0.6
267
Tumor
-0.6
672
Normal
-0.6
937
Tumor
-0.6
146
Normal
-0.6
188
Normal
-0.7
912
Normal
-0.7
262
Normal
-0.7
628
Normal
-0.7
394
Normal
-0.8
231
Tumor
-0.8
636
Normal
-0.8
444
Normal
-0.8
616
Normal
-0.9
1043
Tumor
-0.9
432
Normal
-0.9
743
Tumor
-1.0
666
Normal
-1.0
641
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
