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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
34.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAT1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
68.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
58.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.6
724
Normal
1.6
647
Tumor
1.6
537
Tumor
1.5
313
Tumor
1.4
463
Tumor
1.4
411
Tumor
1.4
957
Tumor
1.4
391
Tumor
1.3
413
Tumor
1.2
951
Tumor
1.2
663
Tumor
1.1
393
Tumor
1.0
497
Tumor
1.0
427
Tumor
1.0
387
Tumor
1.0
661
Tumor
1.0
385
Tumor
1.0
161
Tumor
1.0
923
Tumor
1.0
525
Tumor
1.0
211
Tumor
1.0
953
Tumor
0.9
965
Tumor
0.8
141
Tumor
0.8
743
Tumor
0.8
367
Tumor
0.8
487
Tumor
0.8
535
Tumor
0.8
571
Tumor
0.8
533
Tumor
0.7
357
Tumor
0.7
943
Tumor
0.7
125
Tumor
0.7
283
Tumor
0.7
1013
Tumor
0.7
491
Tumor
0.7
465
Tumor
0.6
983
Tumor
0.6
1021
Tumor
0.6
573
Tumor
0.6
375
Tumor
0.6
383
Tumor
0.6
285
Tumor
0.6
331
Tumor
0.5
351
Tumor
0.5
527
Tumor
0.5
423
Tumor
0.5
523
Tumor
0.5
517
Tumor
0.4
355
Tumor
0.4
815
Tumor
0.4
311
Tumor
0.4
127
Tumor
0.4
967
Tumor
0.3
223
Tumor
0.3
467
Tumor
0.3
814
Normal
0.3
277
Tumor
0.3
937
Tumor
0.3
341
Tumor
0.3
443
Tumor
0.3
433
Tumor
0.3
185
Tumor
0.3
567
Tumor
0.3
727
Tumor
0.2
213
Tumor
0.2
217
Tumor
0.2
545
Tumor
0.2
113
Tumor
0.2
865
Tumor
0.2
435
Tumor
0.2
112
Tumor
0.2
187
Tumor
0.2
493
Tumor
0.2
267
Tumor
0.1
191
Tumor
0.1
171
Tumor
0.1
665
Tumor
0.1
695
Tumor
0.1
977
Tumor
0.1
343
Tumor
0.1
297
Tumor
0.1
477
Tumor
0.1
447
Tumor
0.1
777
Tumor
0.1
445
Tumor
0.1
925
Tumor
0.1
415
Tumor
0.1
257
Tumor
0.0
966
Normal
0.0
671
Tumor
0.0
271
Tumor
0.0
481
Tumor
0.0
913
Tumor
0.0
817
Tumor
0.0
963
Tumor
0.0
975
Tumor
0.0
461
Tumor
-0.1
737
Tumor
-0.1
877
Tumor
-0.1
883
Tumor
-0.1
314
Normal
-0.1
451
Tumor
-0.1
434
Normal
-0.1
455
Tumor
-0.1
483
Tumor
-0.1
1045
Tumor
-0.1
1031
Tumor
-0.1
813
Tumor
-0.1
332
Normal
-0.1
755
Tumor
-0.1
851
Tumor
-0.1
917
Tumor
-0.1
131
Tumor
-0.1
745
Tumor
-0.1
137
Tumor
-0.1
873
Tumor
-0.2
421
Tumor
-0.2
861
Tumor
-0.2
471
Tumor
-0.2
921
Tumor
-0.2
955
Tumor
-0.2
713
Tumor
-0.2
195
Tumor
-0.2
147
Tumor
-0.2
286
Normal
-0.2
124
Normal
-0.2
473
Tumor
-0.2
278
Normal
-0.2
741
Tumor
-0.2
431
Tumor
-0.2
881
Tumor
-0.2
1042
Normal
-0.2
224
Normal
-0.2
742
Normal
-0.2
188
Normal
-0.2
422
Normal
-0.2
123
Tumor
-0.2
363
Tumor
-0.2
128
Normal
-0.2
221
Tumor
-0.2
914
Normal
-0.2
114
Normal
-0.2
635
Tumor
-0.2
823
Tumor
-0.2
327
Tumor
-0.2
386
Normal
-0.2
227
Tumor
-0.2
111
Normal
-0.2
395
Tumor
-0.3
563
Tumor
-0.3
361
Tumor
-0.3
353
Tumor
-0.3
444
Normal
-0.3
284
Normal
-0.3
261
Tumor
-0.3
312
Normal
-0.3
192
Normal
-0.3
1026
Normal
-0.3
212
Normal
-0.3
126
Normal
-0.3
723
Tumor
-0.3
298
Normal
-0.3
964
Normal
-0.3
1043
Tumor
-0.3
472
Normal
-0.3
738
Normal
-0.3
482
Normal
-0.3
867
Tumor
-0.3
262
Normal
-0.3
515
Tumor
-0.3
862
Normal
-0.3
697
Tumor
-0.3
268
Normal
-0.3
863
Tumor
-0.3
456
Normal
-0.3
218
Normal
-0.3
615
Tumor
-0.3
857
Tumor
-0.3
978
Normal
-0.3
968
Normal
-0.4
186
Normal
-0.4
228
Normal
-0.4
916
Normal
-0.4
214
Normal
-0.4
1022
Normal
-0.4
536
Normal
-0.4
135
Tumor
-0.4
721
Tumor
-0.4
976
Normal
-0.4
478
Normal
-0.4
231
Tumor
-0.4
396
Normal
-0.4
416
Normal
-0.4
272
Normal
-0.4
138
Normal
-0.4
412
Normal
-0.4
662
Normal
-0.4
145
Tumor
-0.4
356
Normal
-0.4
1032
Normal
-0.4
553
Tumor
-0.4
492
Normal
-0.4
428
Normal
-0.4
464
Normal
-0.4
864
Normal
-0.4
915
Tumor
-0.4
1028
Normal
-0.4
874
Normal
-0.4
328
Normal
-0.4
852
Normal
-0.4
258
Normal
-0.4
196
Normal
-0.4
1015
Tumor
-0.4
546
Normal
-0.4
172
Normal
-0.4
388
Normal
-0.4
222
Normal
-0.4
474
Normal
-0.4
392
Normal
-0.4
866
Normal
-0.4
426
Normal
-0.4
716
Normal
-0.4
685
Tumor
-0.4
394
Normal
-0.5
468
Normal
-0.5
1016
Normal
-0.5
162
Normal
-0.5
364
Normal
-0.5
148
Normal
-0.5
462
Normal
-0.5
498
Normal
-0.5
436
Normal
-0.5
366
Normal
-0.5
526
Normal
-0.5
824
Normal
-0.5
557
Tumor
-0.5
232
Normal
-0.5
446
Normal
-0.5
746
Normal
-0.5
722
Normal
-0.5
424
Normal
-0.5
868
Normal
-0.5
696
Normal
-0.5
884
Normal
-0.5
365
Tumor
-0.5
666
Normal
-0.5
911
Tumor
-0.5
882
Normal
-0.5
728
Normal
-0.5
488
Normal
-0.5
432
Normal
-0.5
132
Normal
-0.5
648
Normal
-0.5
816
Normal
-0.5
362
Normal
-0.5
466
Normal
-0.5
617
Tumor
-0.5
528
Normal
-0.5
534
Normal
-0.5
744
Normal
-0.5
1046
Normal
-0.5
352
Normal
-0.5
452
Normal
-0.5
136
Normal
-0.5
981
Tumor
-0.5
858
Normal
-0.5
956
Normal
-0.6
952
Normal
-0.6
538
Normal
-0.6
564
Normal
-0.6
574
Normal
-0.6
715
Tumor
-0.6
922
Normal
-0.6
924
Normal
-0.6
494
Normal
-0.6
1041
Tumor
-0.6
1027
Tumor
-0.6
1044
Normal
-0.6
982
Normal
-0.6
918
Normal
-0.6
518
Normal
-0.6
568
Normal
-0.6
484
Normal
-0.6
558
Normal
-0.6
664
Normal
-0.6
1014
Normal
-0.6
878
Normal
-0.6
714
Normal
-0.6
958
Normal
-0.6
414
Normal
-0.6
944
Normal
-0.6
344
Normal
-0.6
627
Tumor
-0.6
513
Tumor
-0.6
358
Normal
-0.6
984
Normal
-0.6
786
Normal
-0.6
142
Normal
-0.6
912
Normal
-0.6
698
Normal
-0.6
146
Normal
-0.7
778
Normal
-0.7
756
Normal
-0.7
448
Normal
-0.7
342
Normal
-0.7
628
Normal
-0.7
368
Normal
-0.7
926
Normal
-0.7
572
Normal
-0.7
524
Normal
-0.7
554
Normal
-0.7
818
Normal
-0.7
938
Normal
-0.7
354
Normal
-0.7
686
Normal
-0.7
618
Normal
-0.8
642
Normal
-0.8
1025
Tumor
-0.8
376
Normal
-0.8
514
Normal
-0.8
636
Normal
-0.8
384
Normal
-0.8
616
Normal
-0.8
954
Normal
-0.9
672
Normal
-0.9
785
Tumor
-0.9
516
Normal
-0.9
641
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
