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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CALU is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
281.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
226.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
224.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
196.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
184.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
169.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
165.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
164.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
160.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
129.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
121.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
119.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
112.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
111.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
104.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
103.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
101.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
99.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
95.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
93.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
93.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
89.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
89.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
87.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
87.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
86.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
85.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
85.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
83.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
83.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
80.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
80.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
79.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
76.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
73.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
72.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
71.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
70.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
68.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
67.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
65.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
65.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
65.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
64.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
63.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
62.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
62.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
62.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
61.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
61.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
58.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
56.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
55.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
54.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
53.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
52.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
51.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
51.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
51.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
49.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
49.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
45.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
44.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
44.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
42.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
40.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
31.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CALU is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
159.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
117.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
85.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
84.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
79.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
70.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
70.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
67.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
61.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
58.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
54.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
53.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
52.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
46.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
43.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
34.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.7
743
Tumor
1.6
965
Tumor
1.5
285
Tumor
1.4
351
Tumor
1.4
283
Tumor
1.3
387
Tumor
1.2
445
Tumor
1.2
481
Tumor
1.1
983
Tumor
1.0
724
Normal
1.0
851
Tumor
1.0
813
Tumor
0.9
857
Tumor
0.9
785
Tumor
0.9
535
Tumor
0.9
1015
Tumor
0.9
171
Tumor
0.8
231
Tumor
0.8
665
Tumor
0.8
545
Tumor
0.8
497
Tumor
0.8
661
Tumor
0.7
923
Tumor
0.7
223
Tumor
0.7
567
Tumor
0.7
917
Tumor
0.6
537
Tumor
0.6
536
Normal
0.6
131
Tumor
0.6
491
Tumor
0.6
517
Tumor
0.6
343
Tumor
0.6
727
Tumor
0.6
425
Tumor
0.6
963
Tumor
0.6
123
Tumor
0.6
915
Tumor
0.6
493
Tumor
0.5
977
Tumor
0.5
671
Tumor
0.5
473
Tumor
0.5
953
Tumor
0.5
483
Tumor
0.5
525
Tumor
0.5
125
Tumor
0.5
227
Tumor
0.5
375
Tumor
0.5
211
Tumor
0.5
363
Tumor
0.5
573
Tumor
0.5
937
Tumor
0.4
943
Tumor
0.4
615
Tumor
0.4
367
Tumor
0.4
814
Normal
0.4
865
Tumor
0.4
527
Tumor
0.4
391
Tumor
0.4
1021
Tumor
0.4
697
Tumor
0.4
755
Tumor
0.3
647
Tumor
0.3
715
Tumor
0.3
447
Tumor
0.3
951
Tumor
0.3
195
Tumor
0.3
311
Tumor
0.3
685
Tumor
0.3
975
Tumor
0.3
463
Tumor
0.3
492
Normal
0.3
524
Normal
0.3
395
Tumor
0.3
327
Tumor
0.3
297
Tumor
0.3
451
Tumor
0.3
863
Tumor
0.3
877
Tumor
0.2
1027
Tumor
0.2
745
Tumor
0.2
355
Tumor
0.2
498
Normal
0.2
1045
Tumor
0.2
925
Tumor
0.2
721
Tumor
0.2
883
Tumor
0.2
261
Tumor
0.1
433
Tumor
0.1
538
Normal
0.1
984
Normal
0.1
1014
Normal
0.1
383
Tumor
0.1
1025
Tumor
0.1
217
Tumor
0.1
478
Normal
0.1
411
Tumor
0.1
916
Normal
0.1
635
Tumor
0.1
913
Tumor
0.1
881
Tumor
0.1
413
Tumor
0.1
713
Tumor
0.1
978
Normal
0.1
257
Tumor
0.1
147
Tumor
0.1
852
Normal
0.1
421
Tumor
0.1
365
Tumor
0.1
922
Normal
0.1
137
Tumor
0.1
523
Tumor
0.0
212
Normal
0.0
467
Tumor
0.0
967
Tumor
0.0
284
Normal
0.0
815
Tumor
0.0
477
Tumor
0.0
553
Tumor
0.0
415
Tumor
0.0
113
Tumor
0.0
737
Tumor
0.0
514
Normal
0.0
954
Normal
0.0
487
Tumor
0.0
696
Normal
0.0
494
Normal
0.0
1044
Normal
0.0
124
Normal
0.0
161
Tumor
0.0
911
Tumor
0.0
224
Normal
0.0
187
Tumor
0.0
686
Normal
0.0
921
Tumor
0.0
427
Tumor
0.0
944
Normal
0.0
435
Tumor
0.0
213
Tumor
0.0
958
Normal
-0.1
191
Tumor
-0.1
955
Tumor
-0.1
918
Normal
-0.1
672
Normal
-0.1
571
Tumor
-0.1
861
Tumor
-0.1
741
Tumor
-0.1
554
Normal
-0.1
778
Normal
-0.1
516
Normal
-0.1
966
Normal
-0.1
557
Tumor
-0.1
823
Tumor
-0.1
981
Tumor
-0.1
968
Normal
-0.1
982
Normal
-0.1
455
Tumor
-0.1
952
Normal
-0.1
518
Normal
-0.1
461
Tumor
-0.1
1028
Normal
-0.1
526
Normal
-0.1
563
Tumor
-0.1
448
Normal
-0.1
488
Normal
-0.1
393
Tumor
-0.1
528
Normal
-0.1
924
Normal
-0.2
723
Tumor
-0.2
513
Tumor
-0.2
331
Tumor
-0.2
185
Tumor
-0.2
957
Tumor
-0.2
228
Normal
-0.2
716
Normal
-0.2
956
Normal
-0.2
714
Normal
-0.2
744
Normal
-0.2
434
Normal
-0.2
412
Normal
-0.2
357
Tumor
-0.2
817
Tumor
-0.2
1043
Tumor
-0.2
1016
Normal
-0.2
976
Normal
-0.2
816
Normal
-0.2
515
Tumor
-0.2
873
Tumor
-0.2
964
Normal
-0.2
392
Normal
-0.2
546
Normal
-0.2
572
Normal
-0.2
617
Tumor
-0.2
534
Normal
-0.2
385
Tumor
-0.2
878
Normal
-0.2
444
Normal
-0.2
868
Normal
-0.2
636
Normal
-0.2
926
Normal
-0.2
938
Normal
-0.2
722
Normal
-0.3
286
Normal
-0.3
698
Normal
-0.3
431
Tumor
-0.3
884
Normal
-0.3
641
Tumor
-0.3
558
Normal
-0.3
484
Normal
-0.3
474
Normal
-0.3
1041
Tumor
-0.3
221
Tumor
-0.3
662
Normal
-0.3
361
Tumor
-0.3
786
Normal
-0.3
1042
Normal
-0.3
1026
Normal
-0.3
364
Normal
-0.3
344
Normal
-0.3
533
Tumor
-0.3
1032
Normal
-0.3
864
Normal
-0.3
356
Normal
-0.3
666
Normal
-0.3
738
Normal
-0.3
728
Normal
-0.3
188
Normal
-0.3
368
Normal
-0.3
648
Normal
-0.3
127
Tumor
-0.3
114
Normal
-0.3
384
Normal
-0.3
574
Normal
-0.4
376
Normal
-0.4
756
Normal
-0.4
452
Normal
-0.4
858
Normal
-0.4
268
Normal
-0.4
145
Tumor
-0.4
423
Tumor
-0.4
354
Normal
-0.4
616
Normal
-0.4
867
Tumor
-0.4
262
Normal
-0.4
468
Normal
-0.4
628
Normal
-0.4
564
Normal
-0.4
664
Normal
-0.4
328
Normal
-0.4
742
Normal
-0.4
267
Tumor
-0.4
341
Tumor
-0.4
882
Normal
-0.4
142
Normal
-0.4
218
Normal
-0.4
866
Normal
-0.4
874
Normal
-0.4
912
Normal
-0.4
232
Normal
-0.4
1046
Normal
-0.4
462
Normal
-0.4
1031
Tumor
-0.4
914
Normal
-0.4
482
Normal
-0.4
313
Tumor
-0.4
362
Normal
-0.5
394
Normal
-0.5
141
Tumor
-0.5
568
Normal
-0.5
272
Normal
-0.5
126
Normal
-0.5
746
Normal
-0.5
258
Normal
-0.5
1022
Normal
-0.5
642
Normal
-0.5
386
Normal
-0.5
396
Normal
-0.5
111
Normal
-0.5
426
Normal
-0.5
138
Normal
-0.5
414
Normal
-0.5
627
Tumor
-0.5
695
Tumor
-0.5
192
Normal
-0.5
332
Normal
-0.5
471
Tumor
-0.5
148
Normal
-0.5
422
Normal
-0.5
818
Normal
-0.5
366
Normal
-0.5
472
Normal
-0.5
663
Tumor
-0.5
824
Normal
-0.5
862
Normal
-0.5
136
Normal
-0.5
388
Normal
-0.5
277
Tumor
-0.6
214
Normal
-0.6
424
Normal
-0.6
466
Normal
-0.6
446
Normal
-0.6
432
Normal
-0.6
352
Normal
-0.6
135
Tumor
-0.6
416
Normal
-0.6
358
Normal
-0.6
618
Normal
-0.6
314
Normal
-0.6
312
Normal
-0.6
443
Tumor
-0.6
342
Normal
-0.6
465
Tumor
-0.6
777
Tumor
-0.6
196
Normal
-0.7
278
Normal
-0.7
128
Normal
-0.7
172
Normal
-0.7
132
Normal
-0.7
456
Normal
-0.7
162
Normal
-0.7
353
Tumor
-0.7
298
Normal
-0.7
186
Normal
-0.7
146
Normal
-0.7
222
Normal
-0.8
436
Normal
-0.8
464
Normal
-0.8
271
Tumor
-0.9
428
Normal
-0.9
112
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.