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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLNC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
65.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
65.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FLNC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.1
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
2.8
231
Tumor
2.6
533
Tumor
2.4
525
Tumor
2.2
537
Tumor
2.0
925
Tumor
2.0
367
Tumor
1.9
477
Tumor
1.5
427
Tumor
1.5
483
Tumor
1.4
127
Tumor
1.3
823
Tumor
1.3
375
Tumor
1.1
571
Tumor
1.0
557
Tumor
0.9
573
Tumor
0.9
283
Tumor
0.8
857
Tumor
0.6
391
Tumor
0.4
435
Tumor
0.4
351
Tumor
0.3
161
Tumor
0.2
297
Tumor
0.1
185
Tumor
0.1
572
Normal
0.1
883
Tumor
0.1
192
Normal
0.0
267
Tumor
0.0
982
Normal
0.0
563
Tumor
0.0
311
Tumor
-0.1
368
Normal
-0.1
671
Tumor
-0.1
534
Normal
-0.1
232
Normal
-0.1
363
Tumor
-0.1
538
Normal
-0.2
536
Normal
-0.2
361
Tumor
-0.2
1042
Normal
-0.2
526
Normal
-0.2
715
Tumor
-0.2
478
Normal
-0.3
421
Tumor
-0.3
813
Tumor
-0.3
917
Tumor
-0.3
444
Normal
-0.3
877
Tumor
-0.3
685
Tumor
-0.3
743
Tumor
-0.3
364
Normal
-0.4
963
Tumor
-0.4
958
Normal
-0.4
528
Normal
-0.4
524
Normal
-0.4
926
Normal
-0.4
975
Tumor
-0.4
546
Normal
-0.4
343
Tumor
-0.4
445
Tumor
-0.4
137
Tumor
-0.4
387
Tumor
-0.4
916
Normal
-0.4
1021
Tumor
-0.4
574
Normal
-0.4
814
Normal
-0.4
384
Normal
-0.4
128
Normal
-0.5
514
Normal
-0.5
428
Normal
-0.5
284
Normal
-0.5
866
Normal
-0.5
146
Normal
-0.5
354
Normal
-0.5
786
Normal
-0.5
492
Normal
-0.5
977
Tumor
-0.5
672
Normal
-0.5
785
Tumor
-0.5
493
Tumor
-0.5
195
Tumor
-0.5
943
Tumor
-0.5
516
Normal
-0.5
746
Normal
-0.5
716
Normal
-0.5
881
Tumor
-0.5
366
Normal
-0.5
376
Normal
-0.5
744
Normal
-0.5
984
Normal
-0.5
142
Normal
-0.5
535
Tumor
-0.5
224
Normal
-0.6
697
Tumor
-0.6
141
Tumor
-0.6
415
Tumor
-0.6
923
Tumor
-0.6
365
Tumor
-0.6
355
Tumor
-0.6
448
Normal
-0.6
214
Normal
-0.6
778
Normal
-0.6
218
Normal
-0.6
268
Normal
-0.6
455
Tumor
-0.6
498
Normal
-0.6
257
Tumor
-0.6
223
Tumor
-0.6
412
Normal
-0.6
817
Tumor
-0.6
262
Normal
-0.6
196
Normal
-0.6
874
Normal
-0.6
882
Normal
-0.6
327
Tumor
-0.6
272
Normal
-0.6
474
Normal
-0.6
314
Normal
-0.6
135
Tumor
-0.6
213
Tumor
-0.7
258
Normal
-0.7
447
Tumor
-0.7
721
Tumor
-0.7
1044
Normal
-0.7
554
Normal
-0.7
696
Normal
-0.7
568
Normal
-0.7
861
Tumor
-0.7
558
Normal
-0.7
228
Normal
-0.7
416
Normal
-0.7
1032
Normal
-0.7
352
Normal
-0.7
138
Normal
-0.7
126
Normal
-0.7
124
Normal
-0.7
722
Normal
-0.7
968
Normal
-0.7
188
Normal
-0.7
472
Normal
-0.7
433
Tumor
-0.7
976
Normal
-0.7
473
Tumor
-0.7
527
Tumor
-0.7
386
Normal
-0.7
756
Normal
-0.7
362
Normal
-0.7
686
Normal
-0.7
191
Tumor
-0.7
222
Normal
-0.8
713
Tumor
-0.8
1015
Tumor
-0.8
641
Tumor
-0.8
471
Tumor
-0.8
545
Tumor
-0.8
662
Normal
-0.8
1045
Tumor
-0.8
1027
Tumor
-0.8
186
Normal
-0.8
136
Normal
-0.8
443
Tumor
-0.8
464
Normal
-0.8
878
Normal
-0.8
1014
Normal
-0.8
564
Normal
-0.8
344
Normal
-0.8
642
Normal
-0.8
383
Tumor
-0.8
1028
Normal
-0.8
818
Normal
-0.8
145
Tumor
-0.8
422
Normal
-0.8
461
Tumor
-0.8
636
Normal
-0.8
312
Normal
-0.8
482
Normal
-0.8
518
Normal
-0.8
513
Tumor
-0.8
666
Normal
-0.8
517
Tumor
-0.8
515
Tumor
-0.8
922
Normal
-0.8
162
Normal
-0.8
924
Normal
-0.8
852
Normal
-0.8
978
Normal
-0.8
627
Tumor
-0.8
816
Normal
-0.8
434
Normal
-0.8
342
Normal
-0.8
863
Tumor
-0.8
392
Normal
-0.8
714
Normal
-0.9
148
Normal
-0.9
278
Normal
-0.9
332
Normal
-0.9
824
Normal
-0.9
217
Tumor
-0.9
394
Normal
-0.9
956
Normal
-0.9
468
Normal
-0.9
553
Tumor
-0.9
664
Normal
-0.9
271
Tumor
-0.9
211
Tumor
-0.9
132
Normal
-0.9
742
Normal
-0.9
424
Normal
-0.9
884
Normal
-0.9
1016
Normal
-0.9
261
Tumor
-0.9
388
Normal
-0.9
456
Normal
-0.9
328
Normal
-0.9
277
Tumor
-0.9
426
Normal
-0.9
491
Tumor
-0.9
221
Tumor
-0.9
873
Tumor
-0.9
341
Tumor
-0.9
172
Normal
-0.9
952
Normal
-0.9
618
Normal
-0.9
1022
Normal
-0.9
745
Tumor
-0.9
921
Tumor
-0.9
436
Normal
-0.9
918
Normal
-0.9
298
Normal
-0.9
286
Normal
-0.9
617
Tumor
-0.9
446
Normal
-0.9
484
Normal
-0.9
698
Normal
-0.9
523
Tumor
-0.9
867
Tumor
-0.9
465
Tumor
-0.9
466
Normal
-0.9
913
Tumor
-1.0
953
Tumor
-1.0
695
Tumor
-1.0
463
Tumor
-1.0
112
Tumor
-1.0
331
Tumor
-1.0
111
Normal
-1.0
414
Normal
-1.0
462
Normal
-1.0
567
Tumor
-1.0
938
Normal
-1.0
1026
Normal
-1.0
187
Tumor
-1.0
356
Normal
-1.0
914
Normal
-1.0
1013
Tumor
-1.0
723
Tumor
-1.0
738
Normal
-1.0
488
Normal
-1.0
864
Normal
-1.0
983
Tumor
-1.0
452
Normal
-1.0
858
Normal
-1.0
777
Tumor
-1.0
967
Tumor
-1.0
396
Normal
-1.0
212
Normal
-1.0
954
Normal
-1.0
385
Tumor
-1.0
358
Normal
-1.0
494
Normal
-1.0
432
Normal
-1.0
615
Tumor
-1.0
964
Normal
-1.1
628
Normal
-1.1
966
Normal
-1.1
114
Normal
-1.1
944
Normal
-1.1
868
Normal
-1.1
423
Tumor
-1.1
728
Normal
-1.1
1046
Normal
-1.1
171
Tumor
-1.1
413
Tumor
-1.1
912
Normal
-1.1
981
Tumor
-1.1
755
Tumor
-1.1
467
Tumor
-1.1
648
Normal
-1.1
663
Tumor
-1.1
227
Tumor
-1.1
353
Tumor
-1.1
647
Tumor
-1.1
741
Tumor
-1.1
862
Normal
-1.2
125
Tumor
-1.2
425
Tumor
-1.2
737
Tumor
-1.2
1031
Tumor
-1.2
395
Tumor
-1.2
616
Normal
-1.2
481
Tumor
-1.2
113
Tumor
-1.2
131
Tumor
-1.2
665
Tumor
-1.2
911
Tumor
-1.2
951
Tumor
-1.2
357
Tumor
-1.2
147
Tumor
-1.3
661
Tumor
-1.3
285
Tumor
-1.3
393
Tumor
-1.3
451
Tumor
-1.3
915
Tumor
-1.3
313
Tumor
-1.4
1025
Tumor
-1.4
955
Tumor
-1.4
431
Tumor
-1.4
411
Tumor
-1.4
724
Normal
-1.5
487
Tumor
-1.5
635
Tumor
-1.5
865
Tumor
-1.5
937
Tumor
-1.5
727
Tumor
-1.5
497
Tumor
-1.6
815
Tumor
-1.6
123
Tumor
-1.6
965
Tumor
-1.6
851
Tumor
-1.6
1043
Tumor
-1.6
957
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
