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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKLN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKLN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
0.8
473
Tumor
0.7
393
Tumor
0.6
283
Tumor
0.5
445
Tumor
0.5
951
Tumor
0.5
851
Tumor
0.5
635
Tumor
0.5
865
Tumor
0.5
983
Tumor
0.5
671
Tumor
0.4
497
Tumor
0.4
285
Tumor
0.4
131
Tumor
0.4
471
Tumor
0.4
535
Tumor
0.3
147
Tumor
0.3
124
Normal
0.3
745
Tumor
0.3
231
Tumor
0.3
977
Tumor
0.3
777
Tumor
0.3
567
Tumor
0.3
128
Normal
0.3
483
Tumor
0.3
785
Tumor
0.3
1025
Tumor
0.3
618
Normal
0.3
114
Normal
0.3
1027
Tumor
0.3
425
Tumor
0.3
823
Tumor
0.3
223
Tumor
0.3
387
Tumor
0.3
665
Tumor
0.3
911
Tumor
0.3
375
Tumor
0.3
224
Normal
0.3
271
Tumor
0.3
517
Tumor
0.3
277
Tumor
0.3
125
Tumor
0.3
953
Tumor
0.3
493
Tumor
0.3
343
Tumor
0.3
1013
Tumor
0.2
487
Tumor
0.2
327
Tumor
0.2
537
Tumor
0.2
113
Tumor
0.2
217
Tumor
0.2
685
Tumor
0.2
423
Tumor
0.2
127
Tumor
0.2
663
Tumor
0.2
573
Tumor
0.2
571
Tumor
0.2
221
Tumor
0.2
1021
Tumor
0.2
213
Tumor
0.2
126
Normal
0.2
641
Tumor
0.2
533
Tumor
0.2
1015
Tumor
0.2
568
Normal
0.2
965
Tumor
0.2
672
Normal
0.2
311
Tumor
0.2
481
Tumor
0.2
627
Tumor
0.2
123
Tumor
0.2
743
Tumor
0.2
137
Tumor
0.2
964
Normal
0.2
863
Tumor
0.2
1031
Tumor
0.2
411
Tumor
0.2
527
Tumor
0.1
227
Tumor
0.1
642
Normal
0.1
697
Tumor
0.1
1041
Tumor
0.1
513
Tumor
0.1
443
Tumor
0.1
515
Tumor
0.1
111
Normal
0.1
958
Normal
0.1
925
Tumor
0.1
943
Tumor
0.1
211
Tumor
0.1
385
Tumor
0.1
976
Normal
0.1
261
Tumor
0.1
881
Tumor
0.1
1014
Normal
0.1
981
Tumor
0.1
267
Tumor
0.1
523
Tumor
0.1
861
Tumor
0.1
915
Tumor
0.1
132
Normal
0.1
212
Normal
0.1
534
Normal
0.1
268
Normal
0.1
186
Normal
0.1
746
Normal
0.1
1026
Normal
0.1
917
Tumor
0.1
617
Tumor
0.1
477
Tumor
0.1
491
Tumor
0.1
756
Normal
0.1
615
Tumor
0.1
956
Normal
0.1
365
Tumor
0.1
328
Normal
0.1
383
Tumor
0.1
416
Normal
0.1
426
Normal
0.1
755
Tumor
0.1
975
Tumor
0.1
433
Tumor
0.1
1028
Normal
0.1
913
Tumor
0.1
546
Normal
0.1
463
Tumor
0.1
228
Normal
0.1
553
Tumor
0.1
356
Normal
0.1
446
Normal
0.1
1022
Normal
0.1
431
Tumor
0.1
545
Tumor
0.1
968
Normal
0.1
662
Normal
0.0
963
Tumor
0.0
262
Normal
0.0
464
Normal
0.0
1045
Tumor
0.0
494
Normal
0.0
232
Normal
0.0
1046
Normal
0.0
191
Tumor
0.0
436
Normal
0.0
778
Normal
0.0
395
Tumor
0.0
422
Normal
0.0
112
Tumor
0.0
814
Normal
0.0
412
Normal
0.0
698
Normal
0.0
141
Tumor
0.0
456
Normal
0.0
636
Normal
0.0
415
Tumor
0.0
472
Normal
0.0
661
Tumor
0.0
883
Tumor
0.0
484
Normal
0.0
355
Tumor
0.0
428
Normal
0.0
813
Tumor
0.0
313
Tumor
0.0
142
Normal
0.0
492
Normal
0.0
924
Normal
0.0
351
Tumor
0.0
366
Normal
0.0
138
Normal
0.0
554
Normal
0.0
666
Normal
0.0
737
Tumor
0.0
564
Normal
0.0
918
Normal
0.0
368
Normal
0.0
488
Normal
0.0
557
Tumor
0.0
572
Normal
0.0
1016
Normal
0.0
363
Tumor
0.0
482
Normal
0.0
272
Normal
0.0
367
Tumor
0.0
574
Normal
0.0
818
Normal
0.0
862
Normal
0.0
218
Normal
0.0
384
Normal
0.0
466
Normal
0.0
926
Normal
0.0
877
Tumor
0.0
364
Normal
0.0
921
Tumor
0.0
136
Normal
0.0
937
Tumor
0.0
146
Normal
0.0
852
Normal
0.0
722
Normal
0.0
923
Tumor
0.0
391
Tumor
0.0
435
Tumor
0.0
628
Normal
0.0
786
Normal
0.0
376
Normal
0.0
648
Normal
0.0
724
Normal
0.0
967
Tumor
0.0
916
Normal
-0.1
461
Tumor
-0.1
857
Tumor
-0.1
528
Normal
-0.1
817
Tumor
-0.1
1042
Normal
-0.1
715
Tumor
-0.1
982
Normal
-0.1
394
Normal
-0.1
467
Tumor
-0.1
1043
Tumor
-0.1
448
Normal
-0.1
424
Normal
-0.1
514
Normal
-0.1
525
Tumor
-0.1
498
Normal
-0.1
455
Tumor
-0.1
878
Normal
-0.1
536
Normal
-0.1
944
Normal
-0.1
714
Normal
-0.1
286
Normal
-0.1
914
Normal
-0.1
966
Normal
-0.1
538
Normal
-0.1
434
Normal
-0.1
361
Tumor
-0.1
873
Tumor
-0.1
297
Tumor
-0.1
386
Normal
-0.1
815
Tumor
-0.1
341
Tumor
-0.1
196
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
258
Normal
-0.1
284
Normal
-0.1
432
Normal
-0.1
957
Tumor
-0.1
192
Normal
-0.1
451
Tumor
-0.1
518
Normal
-0.1
884
Normal
-0.1
723
Tumor
-0.1
1032
Normal
-0.1
135
Tumor
-0.1
647
Tumor
-0.1
922
Normal
-0.1
427
Tumor
-0.1
912
Normal
-0.1
162
Normal
-0.1
278
Normal
-0.1
195
Tumor
-0.1
145
Tumor
-0.1
686
Normal
-0.1
468
Normal
-0.1
353
Tumor
-0.1
616
Normal
-0.1
664
Normal
-0.1
172
Normal
-0.1
444
Normal
-0.2
721
Tumor
-0.2
713
Tumor
-0.2
452
Normal
-0.2
478
Normal
-0.2
214
Normal
-0.2
1044
Normal
-0.2
421
Tumor
-0.2
952
Normal
-0.2
858
Normal
-0.2
563
Tumor
-0.2
222
Normal
-0.2
148
Normal
-0.2
695
Tumor
-0.2
526
Normal
-0.2
955
Tumor
-0.2
696
Normal
-0.2
867
Tumor
-0.2
298
Normal
-0.2
344
Normal
-0.2
558
Normal
-0.2
866
Normal
-0.2
474
Normal
-0.2
864
Normal
-0.2
447
Tumor
-0.2
824
Normal
-0.2
413
Tumor
-0.2
882
Normal
-0.2
312
Normal
-0.2
171
Tumor
-0.2
727
Tumor
-0.2
462
Normal
-0.2
868
Normal
-0.2
874
Normal
-0.2
524
Normal
-0.2
738
Normal
-0.2
185
Tumor
-0.2
396
Normal
-0.2
352
Normal
-0.2
978
Normal
-0.2
742
Normal
-0.2
331
Tumor
-0.2
392
Normal
-0.2
362
Normal
-0.2
357
Tumor
-0.3
938
Normal
-0.3
388
Normal
-0.3
741
Tumor
-0.3
728
Normal
-0.3
187
Tumor
-0.3
465
Tumor
-0.3
188
Normal
-0.3
414
Normal
-0.3
332
Normal
-0.3
516
Normal
-0.3
342
Normal
-0.3
354
Normal
-0.4
816
Normal
-0.4
954
Normal
-0.4
314
Normal
-0.4
744
Normal
-0.4
358
Normal
-0.4
161
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
