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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPECC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPECC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.9
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.2
685
Tumor
1.2
211
Tumor
1.1
525
Tumor
0.9
223
Tumor
0.9
697
Tumor
0.8
917
Tumor
0.8
427
Tumor
0.8
975
Tumor
0.8
311
Tumor
0.8
535
Tumor
0.7
533
Tumor
0.7
536
Normal
0.7
817
Tumor
0.7
395
Tumor
0.7
661
Tumor
0.7
943
Tumor
0.7
375
Tumor
0.7
671
Tumor
0.7
467
Tumor
0.7
367
Tumor
0.6
455
Tumor
0.6
573
Tumor
0.6
881
Tumor
0.6
857
Tumor
0.6
268
Normal
0.6
967
Tumor
0.6
814
Normal
0.6
283
Tumor
0.6
883
Tumor
0.5
447
Tumor
0.5
231
Tumor
0.5
355
Tumor
0.5
745
Tumor
0.5
444
Normal
0.5
813
Tumor
0.5
385
Tumor
0.5
823
Tumor
0.5
478
Normal
0.5
185
Tumor
0.5
923
Tumor
0.5
916
Normal
0.5
563
Tumor
0.5
874
Normal
0.4
963
Tumor
0.4
363
Tumor
0.4
224
Normal
0.4
852
Normal
0.4
958
Normal
0.4
411
Tumor
0.4
213
Tumor
0.4
983
Tumor
0.4
471
Tumor
0.3
1025
Tumor
0.3
383
Tumor
0.3
921
Tumor
0.3
451
Tumor
0.3
421
Tumor
0.3
978
Normal
0.3
724
Normal
0.3
393
Tumor
0.3
171
Tumor
0.3
538
Normal
0.3
415
Tumor
0.3
516
Normal
0.3
492
Normal
0.3
951
Tumor
0.3
297
Tumor
0.3
524
Normal
0.3
434
Normal
0.3
553
Tumor
0.3
498
Normal
0.3
195
Tumor
0.3
285
Tumor
0.3
727
Tumor
0.3
212
Normal
0.3
192
Normal
0.3
284
Normal
0.2
937
Tumor
0.2
351
Tumor
0.2
221
Tumor
0.2
713
Tumor
0.2
956
Normal
0.2
391
Tumor
0.2
357
Tumor
0.2
364
Normal
0.2
976
Normal
0.2
386
Normal
0.2
737
Tumor
0.2
493
Tumor
0.2
477
Tumor
0.2
328
Normal
0.2
1045
Tumor
0.1
861
Tumor
0.1
557
Tumor
0.1
785
Tumor
0.1
217
Tumor
0.1
1042
Normal
0.1
262
Normal
0.1
461
Tumor
0.1
147
Tumor
0.1
715
Tumor
0.1
483
Tumor
0.1
721
Tumor
0.1
884
Normal
0.1
416
Normal
0.1
473
Tumor
0.1
743
Tumor
0.1
913
Tumor
0.1
191
Tumor
0.1
1015
Tumor
0.1
135
Tumor
0.1
966
Normal
0.1
1044
Normal
0.1
431
Tumor
0.1
327
Tumor
0.0
187
Tumor
0.0
188
Normal
0.0
161
Tumor
0.0
1021
Tumor
0.0
412
Normal
0.0
341
Tumor
0.0
432
Normal
0.0
647
Tumor
0.0
984
Normal
0.0
145
Tumor
0.0
982
Normal
0.0
1027
Tumor
0.0
446
Normal
0.0
924
Normal
0.0
474
Normal
0.0
617
Tumor
0.0
384
Normal
0.0
818
Normal
0.0
716
Normal
0.0
228
Normal
0.0
146
Normal
0.0
481
Tumor
0.0
312
Normal
0.0
873
Tumor
0.0
968
Normal
0.0
472
Normal
0.0
272
Normal
0.0
448
Normal
0.0
816
Normal
0.0
387
Tumor
0.0
868
Normal
0.0
343
Tumor
0.0
572
Normal
0.0
918
Normal
-0.1
641
Tumor
-0.1
126
Normal
-0.1
977
Tumor
-0.1
433
Tumor
-0.1
527
Tumor
-0.1
136
Normal
-0.1
952
Normal
-0.1
965
Tumor
-0.1
882
Normal
-0.1
514
Normal
-0.1
922
Normal
-0.1
488
Normal
-0.1
728
Normal
-0.1
723
Tumor
-0.1
353
Tumor
-0.1
878
Normal
-0.1
912
Normal
-0.1
494
Normal
-0.1
497
Tumor
-0.1
356
Normal
-0.1
1014
Normal
-0.1
1028
Normal
-0.1
462
Normal
-0.1
1031
Tumor
-0.1
686
Normal
-0.1
491
Tumor
-0.1
365
Tumor
-0.1
981
Tumor
-0.1
138
Normal
-0.1
436
Normal
-0.1
911
Tumor
-0.1
227
Tumor
-0.1
413
Tumor
-0.1
482
Normal
-0.1
362
Normal
-0.1
926
Normal
-0.1
546
Normal
-0.2
422
Normal
-0.2
286
Normal
-0.2
1032
Normal
-0.2
953
Tumor
-0.2
142
Normal
-0.2
1043
Tumor
-0.2
574
Normal
-0.2
866
Normal
-0.2
528
Normal
-0.2
468
Normal
-0.2
127
Tumor
-0.2
141
Tumor
-0.2
696
Normal
-0.2
394
Normal
-0.2
554
Normal
-0.2
1016
Normal
-0.2
954
Normal
-0.2
851
Tumor
-0.2
925
Tumor
-0.2
786
Normal
-0.2
443
Tumor
-0.2
877
Tumor
-0.2
1022
Normal
-0.2
756
Normal
-0.2
396
Normal
-0.2
484
Normal
-0.2
331
Tumor
-0.2
738
Normal
-0.2
558
Normal
-0.2
867
Tumor
-0.2
131
Tumor
-0.2
424
Normal
-0.2
672
Normal
-0.2
665
Tumor
-0.2
778
Normal
-0.2
534
Normal
-0.2
742
Normal
-0.2
388
Normal
-0.2
445
Tumor
-0.2
722
Normal
-0.2
755
Tumor
-0.2
517
Tumor
-0.3
232
Normal
-0.3
277
Tumor
-0.3
964
Normal
-0.3
214
Normal
-0.3
1013
Tumor
-0.3
824
Normal
-0.3
124
Normal
-0.3
526
Normal
-0.3
858
Normal
-0.3
864
Normal
-0.3
278
Normal
-0.3
428
Normal
-0.3
332
Normal
-0.3
938
Normal
-0.3
366
Normal
-0.3
744
Normal
-0.3
914
Normal
-0.3
944
Normal
-0.3
423
Tumor
-0.3
957
Tumor
-0.3
714
Normal
-0.3
862
Normal
-0.3
352
Normal
-0.3
361
Tumor
-0.3
137
Tumor
-0.3
1046
Normal
-0.3
663
Tumor
-0.3
368
Normal
-0.3
564
Normal
-0.3
662
Normal
-0.3
537
Tumor
-0.3
777
Tumor
-0.3
695
Tumor
-0.3
518
Normal
-0.3
568
Normal
-0.3
487
Tumor
-0.3
741
Tumor
-0.3
456
Normal
-0.3
258
Normal
-0.3
218
Normal
-0.4
698
Normal
-0.4
628
Normal
-0.4
314
Normal
-0.4
392
Normal
-0.4
571
Tumor
-0.4
664
Normal
-0.4
915
Tumor
-0.4
1026
Normal
-0.4
513
Tumor
-0.4
815
Tumor
-0.4
1041
Tumor
-0.4
271
Tumor
-0.4
515
Tumor
-0.4
222
Normal
-0.4
344
Normal
-0.4
523
Tumor
-0.4
452
Normal
-0.4
435
Tumor
-0.4
257
Tumor
-0.4
132
Normal
-0.4
666
Normal
-0.4
865
Tumor
-0.4
414
Normal
-0.4
627
Tumor
-0.5
125
Tumor
-0.5
463
Tumor
-0.5
955
Tumor
-0.5
298
Normal
-0.5
746
Normal
-0.5
261
Tumor
-0.5
464
Normal
-0.5
267
Tumor
-0.5
426
Normal
-0.5
114
Normal
-0.5
615
Tumor
-0.5
354
Normal
-0.6
342
Normal
-0.6
635
Tumor
-0.6
636
Normal
-0.6
642
Normal
-0.6
196
Normal
-0.6
648
Normal
-0.6
466
Normal
-0.6
358
Normal
-0.6
148
Normal
-0.6
863
Tumor
-0.6
376
Normal
-0.6
113
Tumor
-0.6
111
Normal
-0.7
172
Normal
-0.7
425
Tumor
-0.7
618
Normal
-0.7
162
Normal
-0.7
186
Normal
-0.7
567
Tumor
-0.7
465
Tumor
-0.7
313
Tumor
-0.8
616
Normal
-0.8
123
Tumor
-0.8
128
Normal
-0.8
112
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
