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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMC4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
76.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
145.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
143.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
136.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
132.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
132.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
132.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
130.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
129.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
128.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
127.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
125.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
123.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
121.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
121.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
120.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
119.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
117.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
116.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
114.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
114.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
113.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
111.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
111.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
110.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
110.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
109.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
109.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
107.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
107.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
107.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
107.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
106.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
106.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
106.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
106.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
104.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
104.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
103.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
101.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
101.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
101.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
101.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
101.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
101.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
100.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
100.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
100.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
99.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
99.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
99.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
99.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
99.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
99.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
98.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
98.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
98.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
98.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
98.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
98.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
97.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
97.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
97.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
97.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
97.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
97.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
96.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
96.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
95.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
95.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
94.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
94.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
94.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
94.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
93.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
93.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
93.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
93.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
93.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
92.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
92.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
92.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
90.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
90.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
89.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
89.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
89.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
89.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
88.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
88.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
87.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
87.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
87.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
87.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
85.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
85.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
85.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
85.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
84.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
84.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
84.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
84.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
84.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
84.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
84.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
84.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
83.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
83.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
83.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
83.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
83.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
83.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
83.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
83.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
82.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
82.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
82.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
82.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
82.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
81.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
81.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
81.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
81.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
81.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
80.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
80.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
80.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
80.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
80.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
80.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
80.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
80.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
80.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
80.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
79.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
79.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
79.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
79.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
79.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
79.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
78.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
78.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
78.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
78.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
77.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
77.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
77.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
77.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
76.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
76.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
76.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
76.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
76.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
75.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
75.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
74.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
74.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
73.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
73.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
73.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
73.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
72.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
72.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
72.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
71.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
71.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
70.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
70.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
70.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
70.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
70.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
70.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
70.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
69.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
69.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
69.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
68.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
68.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
68.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
68.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
68.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
68.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
67.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
67.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
67.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
67.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
67.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
67.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
66.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
66.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
66.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
66.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
66.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
66.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
66.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
66.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
65.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
65.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
65.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
65.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
65.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
64.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
64.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
64.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
64.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
63.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
63.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
63.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
62.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
62.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
62.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
62.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
61.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
61.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
60.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
60.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
60.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
59.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
59.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
59.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
59.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
59.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
59.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
59.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
58.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
58.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
58.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
58.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
58.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
57.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
57.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
57.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
56.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
56.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
56.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
55.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
55.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
55.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
55.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
55.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
54.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
52.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
50.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
49.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
48.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
48.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
48.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
45.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
43.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
36.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
785
Tumor
0.8
557
Tumor
0.8
861
Tumor
0.8
873
Tumor
0.8
481
Tumor
0.7
491
Tumor
0.7
313
Tumor
0.7
685
Tumor
0.7
857
Tumor
0.7
261
Tumor
0.7
497
Tumor
0.6
1013
Tumor
0.6
697
Tumor
0.6
411
Tumor
0.6
527
Tumor
0.6
863
Tumor
0.5
665
Tumor
0.5
741
Tumor
0.5
745
Tumor
0.5
851
Tumor
0.5
571
Tumor
0.5
937
Tumor
0.5
957
Tumor
0.4
123
Tumor
0.4
435
Tumor
0.4
913
Tumor
0.4
724
Normal
0.4
525
Tumor
0.4
351
Tumor
0.4
721
Tumor
0.4
473
Tumor
0.4
283
Tumor
0.4
211
Tumor
0.4
257
Tumor
0.4
537
Tumor
0.3
635
Tumor
0.3
915
Tumor
0.3
393
Tumor
0.3
647
Tumor
0.3
926
Normal
0.3
487
Tumor
0.3
135
Tumor
0.3
493
Tumor
0.3
137
Tumor
0.3
227
Tumor
0.3
171
Tumor
0.3
513
Tumor
0.3
477
Tumor
0.3
867
Tumor
0.3
865
Tumor
0.3
755
Tumor
0.3
327
Tumor
0.3
815
Tumor
0.3
627
Tumor
0.3
722
Normal
0.3
492
Normal
0.2
1032
Normal
0.2
355
Tumor
0.2
686
Normal
0.2
112
Tumor
0.2
922
Normal
0.2
524
Normal
0.2
963
Tumor
0.2
277
Tumor
0.2
311
Tumor
0.2
448
Normal
0.2
921
Tumor
0.2
1045
Tumor
0.2
777
Tumor
0.2
518
Normal
0.2
953
Tumor
0.2
1028
Normal
0.2
536
Normal
0.2
912
Normal
0.2
494
Normal
0.2
917
Tumor
0.2
911
Tumor
0.2
445
Tumor
0.2
916
Normal
0.2
981
Tumor
0.2
462
Normal
0.2
923
Tumor
0.1
1043
Tumor
0.1
956
Normal
0.1
715
Tumor
0.1
874
Normal
0.1
786
Normal
0.1
952
Normal
0.1
567
Tumor
0.1
884
Normal
0.1
1044
Normal
0.1
147
Tumor
0.1
357
Tumor
0.1
212
Normal
0.1
415
Tumor
0.1
483
Tumor
0.1
977
Tumor
0.1
778
Normal
0.1
958
Normal
0.1
813
Tumor
0.1
924
Normal
0.1
478
Normal
0.1
1041
Tumor
0.1
881
Tumor
0.1
328
Normal
0.1
125
Tumor
0.1
696
Normal
0.1
648
Normal
0.1
533
Tumor
0.1
538
Normal
0.1
864
Normal
0.1
938
Normal
0.1
756
Normal
0.1
716
Normal
0.1
944
Normal
0.1
698
Normal
0.1
955
Tumor
0.1
488
Normal
0.1
554
Normal
0.1
384
Normal
0.1
474
Normal
0.1
412
Normal
0.1
376
Normal
0.1
526
Normal
0.1
284
Normal
0.1
482
Normal
0.0
484
Normal
0.0
354
Normal
0.0
535
Tumor
0.0
498
Normal
0.0
964
Normal
0.0
447
Tumor
0.0
467
Tumor
0.0
368
Normal
0.0
375
Tumor
0.0
228
Normal
0.0
918
Normal
0.0
746
Normal
0.0
366
Normal
0.0
431
Tumor
0.0
615
Tumor
0.0
965
Tumor
0.0
1021
Tumor
0.0
534
Normal
0.0
361
Tumor
0.0
353
Tumor
0.0
416
Normal
0.0
127
Tumor
0.0
515
Tumor
0.0
516
Normal
0.0
528
Normal
0.0
546
Normal
0.0
433
Tumor
0.0
671
Tumor
0.0
695
Tumor
0.0
866
Normal
0.0
224
Normal
0.0
1015
Tumor
0.0
968
Normal
0.0
362
Normal
0.0
1016
Normal
0.0
814
Normal
0.0
364
Normal
0.0
514
Normal
0.0
662
Normal
0.0
358
Normal
0.0
395
Tumor
0.0
553
Tumor
0.0
862
Normal
0.0
966
Normal
0.0
223
Tumor
0.0
342
Normal
0.0
943
Tumor
0.0
141
Tumor
0.0
114
Normal
0.0
982
Normal
0.0
1026
Normal
0.0
383
Tumor
0.0
161
Tumor
0.0
975
Tumor
0.0
523
Tumor
0.0
128
Normal
0.0
672
Normal
0.0
878
Normal
0.0
113
Tumor
0.0
978
Normal
0.0
1046
Normal
0.0
436
Normal
0.0
744
Normal
0.0
421
Tumor
0.0
664
Normal
0.0
145
Tumor
0.0
111
Normal
0.0
356
Normal
0.0
472
Normal
-0.1
341
Tumor
-0.1
1022
Normal
-0.1
286
Normal
-0.1
976
Normal
-0.1
738
Normal
-0.1
817
Tumor
-0.1
142
Normal
-0.1
545
Tumor
-0.1
285
Tumor
-0.1
451
Tumor
-0.1
196
Normal
-0.1
728
Normal
-0.1
267
Tumor
-0.1
882
Normal
-0.1
713
Tumor
-0.1
192
Normal
-0.1
425
Tumor
-0.1
663
Tumor
-0.1
714
Normal
-0.1
452
Normal
-0.1
1042
Normal
-0.1
387
Tumor
-0.1
331
Tumor
-0.1
737
Tumor
-0.1
742
Normal
-0.1
231
Tumor
-0.1
641
Tumor
-0.1
1031
Tumor
-0.1
954
Normal
-0.1
636
Normal
-0.1
434
Normal
-0.1
191
Tumor
-0.1
914
Normal
-0.1
465
Tumor
-0.1
1025
Tumor
-0.1
468
Normal
-0.1
126
Normal
-0.1
132
Normal
-0.1
984
Normal
-0.1
344
Normal
-0.1
217
Tumor
-0.1
618
Normal
-0.1
616
Normal
-0.1
343
Tumor
-0.1
138
Normal
-0.2
213
Tumor
-0.2
124
Normal
-0.2
218
Normal
-0.2
187
Tumor
-0.2
388
Normal
-0.2
214
Normal
-0.2
432
Normal
-0.2
642
Normal
-0.2
852
Normal
-0.2
427
Tumor
-0.2
352
Normal
-0.2
185
Tumor
-0.2
461
Tumor
-0.2
628
Normal
-0.2
471
Tumor
-0.2
1014
Normal
-0.2
136
Normal
-0.2
925
Tumor
-0.2
666
Normal
-0.2
314
Normal
-0.2
365
Tumor
-0.2
983
Tumor
-0.2
297
Tumor
-0.2
172
Normal
-0.2
221
Tumor
-0.2
146
Normal
-0.2
466
Normal
-0.2
868
Normal
-0.2
422
Normal
-0.2
392
Normal
-0.3
573
Tumor
-0.3
823
Tumor
-0.3
816
Normal
-0.3
443
Tumor
-0.3
272
Normal
-0.3
455
Tumor
-0.3
464
Normal
-0.3
262
Normal
-0.3
661
Tumor
-0.3
195
Tumor
-0.3
363
Tumor
-0.3
367
Tumor
-0.3
723
Tumor
-0.3
824
Normal
-0.3
386
Normal
-0.3
446
Normal
-0.3
951
Tumor
-0.3
423
Tumor
-0.3
222
Normal
-0.3
858
Normal
-0.3
463
Tumor
-0.3
883
Tumor
-0.3
271
Tumor
-0.3
456
Normal
-0.4
188
Normal
-0.4
727
Tumor
-0.4
444
Normal
-0.4
186
Normal
-0.4
572
Normal
-0.4
617
Tumor
-0.4
426
Normal
-0.4
391
Tumor
-0.4
394
Normal
-0.4
278
Normal
-0.4
564
Normal
-0.4
148
Normal
-0.4
558
Normal
-0.4
232
Normal
-0.4
563
Tumor
-0.4
162
Normal
-0.4
818
Normal
-0.4
413
Tumor
-0.4
568
Normal
-0.5
258
Normal
-0.5
396
Normal
-0.5
268
Normal
-0.5
574
Normal
-0.5
743
Tumor
-0.5
877
Tumor
-0.5
424
Normal
-0.5
298
Normal
-0.5
428
Normal
-0.5
414
Normal
-0.6
312
Normal
-0.6
967
Tumor
-0.7
385
Tumor
-0.8
332
Normal
-0.9
517
Tumor
-0.9
131
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
