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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATF4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
222.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
782.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
617.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
561.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
533.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
514.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
497.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
496.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
472.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
471.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
470.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
466.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
463.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
454.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
448.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
448.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
447.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
437.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
436.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
436.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
421.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
420.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
409.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
408.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
405.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
401.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
400.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
397.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
393.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
392.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
391.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
391.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
384.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
382.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
377.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
377.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
376.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
376.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
373.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
371.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
368.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
364.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
362.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
361.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
355.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
353.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
349.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
343.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
343.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
341.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
341.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
341.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
336.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
334.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
334.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
330.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
329.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
328.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
326.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
326.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
322.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
322.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
319.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
319.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
319.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
318.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
313.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
312.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
309.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
305.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
305.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
299.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
298.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
296.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
296.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
295.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
294.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
289.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
288.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
284.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
283.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
283.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
282.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
282.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
279.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
278.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
275.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
275.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
274.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
273.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
272.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
267.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
263.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
262.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
262.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
261.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
260.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
259.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
259.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
257.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
257.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
256.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
254.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
254.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
252.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
251.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
251.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
250.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
250.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
248.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
247.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
247.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
245.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
245.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
244.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
244.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
244.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
242.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
242.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
241.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
241.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
240.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
239.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
239.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
239.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
237.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
236.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
236.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
236.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
235.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
234.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
233.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
233.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
233.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
232.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
232.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
232.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
231.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
229.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
229.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
229.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
229.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
227.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
227.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
226.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
226.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
225.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
225.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
224.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
224.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
224.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
223.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
221.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
221.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
220.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
220.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
219.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
219.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
216.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
216.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
216.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
215.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
215.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
215.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
215.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
214.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
212.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
212.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
212.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
212.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
212.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
210.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
210.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
210.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
208.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
207.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
206.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
206.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
206.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
205.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
205.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
205.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
204.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
204.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
204.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
204.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
202.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
200.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
200.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
199.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
198.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
198.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
197.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
197.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
197.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
196.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
196.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
196.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
193.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
192.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
191.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
189.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
189.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
189.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
189.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
189.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
188.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
187.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
187.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
186.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
186.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
186.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
183.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
182.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
181.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
180.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
180.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
180.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
178.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
178.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
178.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
177.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
176.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
176.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
176.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
174.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
173.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
173.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
173.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
172.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
172.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
172.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
171.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
170.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
170.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
169.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
169.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
169.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
168.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
168.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
167.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
166.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
165.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
164.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
164.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
162.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
162.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
161.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
160.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
160.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
157.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
156.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
156.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
156.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
156.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
155.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
154.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
153.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
153.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
152.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
152.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
151.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
151.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
150.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
150.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
149.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
149.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
148.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
148.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
147.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
146.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
145.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
145.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
144.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
144.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
142.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
142.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
141.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
140.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
140.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
140.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
140.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
139.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
138.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
138.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
137.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
137.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
137.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
137.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
137.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
136.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
136.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
136.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
135.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
135.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
133.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
132.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
132.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
131.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
129.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
128.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
127.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
126.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
125.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
125.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
125.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
125.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
123.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
123.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
122.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
120.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
118.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
118.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
117.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
117.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
116.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
115.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
115.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
115.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
114.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
113.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
111.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
111.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
110.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
109.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
109.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
109.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
109.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
108.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
108.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
107.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
103.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
102.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
101.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
101.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
100.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
100.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
97.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
97.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
95.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
95.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
95.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
94.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
92.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
92.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
91.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
89.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
88.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
86.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
86.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
84.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
80.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
80.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
78.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
77.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
77.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
75.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
72.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
68.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
63.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATF4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
246.4
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
1647.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
667.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
585.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
563.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
547.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
538.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
535.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
509.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
509.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
492.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
479.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
479.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
455.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
452.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
446.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
426.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
422.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
418.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
411.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
410.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
410.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
406.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
403.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
399.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
398.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
386.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
378.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
374.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
365.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
362.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
359.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
359.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
356.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
351.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
349.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
345.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
342.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
341.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
339.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
338.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
336.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
334.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
334.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
325.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
323.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
323.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
321.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
319.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
316.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
316.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
314.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
314.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
307.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
306.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
303.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
300.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
298.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
297.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
296.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
293.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
292.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
292.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
292.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
290.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
288.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
286.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
286.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
284.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
284.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
284.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
282.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
278.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
277.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
272.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
272.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
271.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
267.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
265.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
264.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
263.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
257.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
256.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
256.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
254.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
251.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
250.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
249.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
248.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
245.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
245.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
243.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
238.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
237.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
237.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
236.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
236.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
234.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
233.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
233.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
232.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
231.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
231.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
227.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
227.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
226.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
226.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
226.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
226.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
222.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
220.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
219.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
218.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
217.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
215.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
214.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
214.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
213.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
212.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
212.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
211.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
210.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
210.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
210.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
209.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
208.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
207.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
206.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
204.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
204.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
203.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
200.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
199.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
199.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
199.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
198.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
198.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
197.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
196.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
194.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
193.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
193.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
190.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
189.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
187.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
187.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
186.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
185.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
184.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
184.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
183.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
182.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
182.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
181.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
181.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
179.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
178.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
177.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
176.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
176.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
175.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
175.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
174.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
173.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
173.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
172.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
171.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
170.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
170.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
168.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
167.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
166.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
165.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
163.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
163.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
163.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
162.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
160.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
159.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
159.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
157.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
155.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
155.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
153.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
153.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
153.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
152.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
151.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
149.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
146.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
145.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
144.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
144.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
142.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
141.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
141.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
140.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
138.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
137.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
137.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
137.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
136.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
133.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
133.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
131.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
127.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
127.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
127.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
125.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
123.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
119.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
117.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
117.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
116.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
114.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
113.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
109.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
109.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
109.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
108.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
108.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
105.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
104.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
103.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
103.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
101.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
99.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
92.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
62.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
57.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.