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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAICS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
135.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
126.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
116.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
114.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
103.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
95.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
92.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
90.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
85.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
81.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
79.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
79.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
77.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
76.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
75.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
75.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
75.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
75.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
74.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
73.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
73.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
72.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
72.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
71.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
70.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
69.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
67.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
67.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
67.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
66.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
66.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
65.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
63.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
62.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
62.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
62.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
62.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
62.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
60.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
60.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
60.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
59.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
58.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
57.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
56.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
50.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
50.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
50.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
49.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
49.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
46.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
46.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
41.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
40.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
40.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
39.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
38.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAICS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.6
Number of samples
231
Samples
Sample
Description
TPM
DO45265
0 years, male, NA, stage:3, alive, 1020 days
172.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
149.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
144.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
126.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
122.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
98.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
82.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
81.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
77.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
71.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
68.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
67.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
62.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
62.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
61.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
61.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
60.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
60.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
58.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
57.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
57.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
56.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
54.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
52.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
51.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
51.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
51.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
50.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
50.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
50.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
49.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
49.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
47.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
47.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
45.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
41.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
41.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
39.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
38.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
35.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1045
Tumor
1.0
951
Tumor
0.9
1025
Tumor
0.9
743
Tumor
0.7
911
Tumor
0.7
523
Tumor
0.7
487
Tumor
0.6
313
Tumor
0.6
965
Tumor
0.6
635
Tumor
0.6
1013
Tumor
0.6
746
Normal
0.5
123
Tumor
0.5
955
Tumor
0.5
921
Tumor
0.5
471
Tumor
0.5
517
Tumor
0.5
131
Tumor
0.5
981
Tumor
0.4
745
Tumor
0.4
755
Tumor
0.4
742
Normal
0.4
484
Normal
0.4
271
Tumor
0.4
977
Tumor
0.4
518
Normal
0.4
867
Tumor
0.4
171
Tumor
0.4
862
Normal
0.4
878
Normal
0.4
952
Normal
0.4
436
Normal
0.4
554
Normal
0.4
865
Tumor
0.4
1026
Normal
0.3
915
Tumor
0.3
727
Tumor
0.3
738
Normal
0.3
924
Normal
0.3
1022
Normal
0.3
714
Normal
0.3
1021
Tumor
0.3
222
Normal
0.3
112
Tumor
0.3
966
Normal
0.3
938
Normal
0.3
128
Normal
0.3
353
Tumor
0.3
482
Normal
0.3
546
Normal
0.3
114
Normal
0.3
786
Normal
0.3
778
Normal
0.3
534
Normal
0.3
472
Normal
0.3
363
Tumor
0.2
481
Tumor
0.2
132
Normal
0.2
285
Tumor
0.2
141
Tumor
0.2
698
Normal
0.2
342
Normal
0.2
723
Tumor
0.2
448
Normal
0.2
816
Normal
0.2
341
Tumor
0.2
111
Normal
0.2
452
Normal
0.2
618
Normal
0.2
866
Normal
0.2
824
Normal
0.2
982
Normal
0.2
956
Normal
0.2
874
Normal
0.2
462
Normal
0.2
914
Normal
0.2
744
Normal
0.2
414
Normal
0.2
642
Normal
0.2
1028
Normal
0.2
393
Tumor
0.2
785
Tumor
0.2
944
Normal
0.2
922
Normal
0.2
918
Normal
0.2
728
Normal
0.2
861
Tumor
0.2
456
Normal
0.2
648
Normal
0.2
882
Normal
0.2
474
Normal
0.2
617
Tumor
0.2
756
Normal
0.2
1014
Normal
0.1
1041
Tumor
0.1
196
Normal
0.1
286
Normal
0.1
416
Normal
0.1
964
Normal
0.1
1043
Tumor
0.1
1016
Normal
0.1
696
Normal
0.1
356
Normal
0.1
516
Normal
0.1
386
Normal
0.1
358
Normal
0.1
1032
Normal
0.1
721
Tumor
0.1
258
Normal
0.1
351
Tumor
0.1
923
Tumor
0.1
257
Tumor
0.1
553
Tumor
0.1
864
Normal
0.1
488
Normal
0.1
148
Normal
0.1
968
Normal
0.1
463
Tumor
0.1
327
Tumor
0.1
172
Normal
0.1
113
Tumor
0.1
186
Normal
0.1
526
Normal
0.1
162
Normal
0.1
1046
Normal
0.1
422
Normal
0.1
722
Normal
0.1
137
Tumor
0.1
426
Normal
0.1
926
Normal
0.1
261
Tumor
0.1
412
Normal
0.1
912
Normal
0.1
366
Normal
0.1
364
Normal
0.1
716
Normal
0.1
125
Tumor
0.1
715
Tumor
0.1
1044
Normal
0.1
136
Normal
0.1
686
Normal
0.1
477
Tumor
0.0
298
Normal
0.0
388
Normal
0.0
858
Normal
0.0
314
Normal
0.0
212
Normal
0.0
671
Tumor
0.0
466
Normal
0.0
514
Normal
0.0
228
Normal
0.0
616
Normal
0.0
138
Normal
0.0
464
Normal
0.0
494
Normal
0.0
1042
Normal
0.0
312
Normal
0.0
214
Normal
0.0
1015
Tumor
0.0
211
Tumor
0.0
568
Normal
0.0
272
Normal
0.0
976
Normal
0.0
367
Tumor
0.0
741
Tumor
0.0
428
Normal
0.0
628
Normal
0.0
663
Tumor
0.0
413
Tumor
0.0
135
Tumor
0.0
564
Normal
0.0
354
Normal
0.0
394
Normal
0.0
818
Normal
0.0
537
Tumor
0.0
328
Normal
0.0
958
Normal
0.0
218
Normal
0.0
957
Tumor
0.0
984
Normal
0.0
916
Normal
0.0
978
Normal
0.0
868
Normal
0.0
538
Normal
0.0
884
Normal
0.0
954
Normal
0.0
424
Normal
0.0
724
Normal
0.0
432
Normal
-0.1
574
Normal
-0.1
283
Tumor
-0.1
396
Normal
-0.1
278
Normal
-0.1
232
Normal
-0.1
983
Tumor
-0.1
376
Normal
-0.1
146
Normal
-0.1
528
Normal
-0.1
392
Normal
-0.1
664
Normal
-0.1
126
Normal
-0.1
666
Normal
-0.1
468
Normal
-0.1
557
Tumor
-0.1
451
Tumor
-0.1
558
Normal
-0.1
695
Tumor
-0.1
572
Normal
-0.1
262
Normal
-0.1
161
Tumor
-0.1
636
Normal
-0.1
344
Normal
-0.1
937
Tumor
-0.1
284
Normal
-0.1
877
Tumor
-0.1
817
Tumor
-0.1
124
Normal
-0.1
863
Tumor
-0.1
223
Tumor
-0.1
777
Tumor
-0.2
267
Tumor
-0.2
647
Tumor
-0.2
662
Normal
-0.2
492
Normal
-0.2
661
Tumor
-0.2
515
Tumor
-0.2
852
Normal
-0.2
943
Tumor
-0.2
362
Normal
-0.2
187
Tumor
-0.2
142
Normal
-0.2
434
Normal
-0.2
332
Normal
-0.2
391
Tumor
-0.2
498
Normal
-0.2
446
Normal
-0.2
567
Tumor
-0.2
423
Tumor
-0.2
352
Normal
-0.2
195
Tumor
-0.2
361
Tumor
-0.2
331
Tumor
-0.2
188
Normal
-0.2
368
Normal
-0.2
627
Tumor
-0.3
975
Tumor
-0.3
524
Normal
-0.3
268
Normal
-0.3
573
Tumor
-0.3
145
Tumor
-0.3
814
Normal
-0.3
615
Tumor
-0.3
967
Tumor
-0.3
857
Tumor
-0.3
365
Tumor
-0.3
127
Tumor
-0.3
713
Tumor
-0.3
813
Tumor
-0.3
224
Normal
-0.3
192
Normal
-0.3
343
Tumor
-0.3
445
Tumor
-0.3
435
Tumor
-0.3
355
Tumor
-0.3
913
Tumor
-0.4
536
Normal
-0.4
478
Normal
-0.4
527
Tumor
-0.4
415
Tumor
-0.4
513
Tumor
-0.4
697
Tumor
-0.4
231
Tumor
-0.4
963
Tumor
-0.4
815
Tumor
-0.4
873
Tumor
-0.4
227
Tumor
-0.4
147
Tumor
-0.4
447
Tumor
-0.4
473
Tumor
-0.4
444
Normal
-0.4
217
Tumor
-0.4
431
Tumor
-0.4
191
Tumor
-0.5
427
Tumor
-0.5
433
Tumor
-0.5
395
Tumor
-0.5
185
Tumor
-0.5
385
Tumor
-0.5
461
Tumor
-0.5
571
Tumor
-0.5
1027
Tumor
-0.5
497
Tumor
-0.5
483
Tumor
-0.5
672
Normal
-0.5
925
Tumor
-0.5
443
Tumor
-0.5
297
Tumor
-0.5
851
Tumor
-0.5
387
Tumor
-0.5
467
Tumor
-0.5
563
Tumor
-0.5
685
Tumor
-0.6
493
Tumor
-0.6
357
Tumor
-0.6
277
Tumor
-0.6
883
Tumor
-0.6
384
Normal
-0.6
881
Tumor
-0.6
1031
Tumor
-0.6
665
Tumor
-0.6
491
Tumor
-0.6
535
Tumor
-0.6
465
Tumor
-0.6
421
Tumor
-0.7
953
Tumor
-0.7
525
Tumor
-0.7
737
Tumor
-0.7
823
Tumor
-0.7
213
Tumor
-0.7
411
Tumor
-0.7
221
Tumor
-0.7
311
Tumor
-0.8
375
Tumor
-0.8
533
Tumor
-0.8
917
Tumor
-0.8
545
Tumor
-0.8
455
Tumor
-0.8
425
Tumor
-0.8
383
Tumor
-0.9
641
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
