MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:24.2 nTPM
GTEx:10.3 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:30.3 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2019 Male, age 18, unknown 27.1
2666 Male, age 74, left hemisphere 21.2
2586 Male, age 75, left hemisphere 20.8
1827 Male, age 72, unknown 19.6
1870 Female, age 42, unknown 16.0
2411 Female, age 72, unknown 15.6
2828 Female, age 72, unknown 15.2
1830 Male, age 51, unknown 14.9
1833 Male, age 53, unknown 14.4
2219 Male, age 76, both hemispheres 14.3
Dorsal raphe nucleus
nTPM: 17.4
2298 Female, age 72, unknown 21.4
1828 Male, age 53, unknown 17.3
2750 Male, age 76, both hemispheres 16.7
2016 Female, age 72, unknown 16.5
2047 Male, age 72, unknown 15.2
Inferior colliculus
nTPM: 19.1
2097 Female, age 72, unknown 21.2
1890 Male, age 53, unknown 19.7
1848 Female, age 42, unknown 18.8
2849 Male, age 72, unknown 16.4
Median raphe nucleus
nTPM: 20.3
2220 Male, age 76, midline 20.3
Periaquaductal grey, anterior
nTPM: 18.7
2502 Female, age 75, unknown 19.6
1795 Male, age 51, unknown 18.9
1947 Male, age 18, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 17.9
1831 Male, age 72, unknown 19.0
2850 Male, age 76, both hemispheres 18.4
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 16.7
Periaquaductal grey, lateral
nTPM: 17.0
2272 Male, age 74, both hemispheres 19.5
2140 Male, age 76, both hemispheres 16.3
2053 Male, age 18, unknown 15.1
Pretectal area
nTPM: 24.2
2007 Male, age 72, unknown 34.1
1816 Male, age 51, unknown 33.8
1817 Female, age 42, unknown 32.0
1815 Male, age 53, unknown 30.0
1944 Female, age 72, unknown 29.7
2273 Male, age 74, both hemispheres 20.6
2667 Female, age 75, unknown 20.1
2407 Male, age 75, both hemispheres 18.6
2224 Female, age 72, unknown 17.7
2316 Male, age 76, right hemisphere 15.0
2825 Male, age 18, unknown 14.8
Red nucleus
nTPM: 18.5
2785 Male, age 18, unknown 26.0
1821 Female, age 72, unknown 20.9
2725 Female, age 75, unknown 19.7
1954 Female, age 42, unknown 19.3
1904 Male, age 53, unknown 19.1
1865 Male, age 51, unknown 19.0
2584 Male, age 75, left hemisphere 18.6
2503 Female, age 72, unknown 17.6
2823 Male, age 76, right hemisphere 15.8
2227 Male, age 72, unknown 15.7
2769 Male, age 72, unknown 15.6
2588 Male, age 74, left hemisphere 15.2
Substantia nigra
nTPM: 19.6
1889 Female, age 72, unknown 26.9
2409 Female, age 72, unknown 22.0
2583 Male, age 75, right hemisphere 21.2
2241 Male, age 72, unknown 20.6
1916 Female, age 42, unknown 20.0
1851 Male, age 51, unknown 19.3
2665 Male, age 74, both hemispheres 17.8
2590 Female, age 75, unknown 16.8
1941 Male, age 53, unknown 16.7
2699 Male, age 18, unknown 14.4
Superior colliculus
nTPM: 19.4
2087 Female, age 72, unknown 23.9
2668 Female, age 75, unknown 22.5
2261 Male, age 18, unknown 21.8
1796 Male, age 53, unknown 20.2
1913 Female, age 42, unknown 19.2
1995 Male, age 72, unknown 18.3
2664 Male, age 75, both hemispheres 17.9
2587 Male, age 74, left hemisphere 17.8
1895 Male, age 76, right hemisphere 16.7
1839 Male, age 51, unknown 15.6
Ventral tegmental area
nTPM: 17.1
2410 Female, age 72, unknown 20.3
2218 Male, age 76, both hemispheres 18.2
2021 Male, age 53, unknown 16.6
2223 Female, age 72, unknown 16.5
1942 Male, age 51, unknown 16.0
1915 Female, age 42, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 17.6
Min nTPM: 5.3
Std nTPM: 1.9
Median nTPM: 10.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 17.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 15.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 14.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 13.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 5.7
Sample A Female 11.9
Sample B Female 9.6
Sample C Male 13.3
Sample D Male 5.7
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 10.4
Sample C Male 29.4
Sample D Male 16.0
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 10.7
Min nTPM: 7.1
Sample B Female 8.8
Sample C Male 10.7
Sample D Male 7.1
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 15.1
Sample C Male 24.5
Sample D Male 14.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 29.2
Sample C Female 33.8
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
69353170 Antisense, RP_050412_01_G05, Mouse strain C57BL/6J (56 days, male) 4.4

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