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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35E1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35E1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.8
571
Tumor
1.2
188
Normal
1.2
161
Tumor
1.2
285
Tumor
1.2
967
Tumor
1.2
567
Tumor
1.0
863
Tumor
0.9
713
Tumor
0.9
172
Normal
0.8
527
Tumor
0.8
277
Tumor
0.8
353
Tumor
0.7
311
Tumor
0.7
685
Tumor
0.7
1045
Tumor
0.6
148
Normal
0.6
211
Tumor
0.6
913
Tumor
0.6
192
Normal
0.6
981
Tumor
0.6
686
Normal
0.6
297
Tumor
0.6
463
Tumor
0.6
331
Tumor
0.6
721
Tumor
0.6
557
Tumor
0.5
332
Normal
0.5
186
Normal
0.5
697
Tumor
0.5
223
Tumor
0.5
141
Tumor
0.5
722
Normal
0.5
817
Tumor
0.5
357
Tumor
0.5
815
Tumor
0.5
395
Tumor
0.4
456
Normal
0.4
358
Normal
0.4
444
Normal
0.4
436
Normal
0.4
983
Tumor
0.4
661
Tumor
0.4
696
Normal
0.4
445
Tumor
0.4
714
Normal
0.4
435
Tumor
0.4
427
Tumor
0.4
481
Tumor
0.4
461
Tumor
0.4
965
Tumor
0.4
354
Normal
0.4
525
Tumor
0.4
298
Normal
0.3
533
Tumor
0.3
393
Tumor
0.3
851
Tumor
0.3
228
Normal
0.3
868
Normal
0.3
727
Tumor
0.3
446
Normal
0.3
1014
Normal
0.3
312
Normal
0.3
447
Tumor
0.3
1022
Normal
0.3
1025
Tumor
0.3
185
Tumor
0.3
328
Normal
0.3
396
Normal
0.3
352
Normal
0.3
716
Normal
0.3
466
Normal
0.3
955
Tumor
0.3
873
Tumor
0.3
1031
Tumor
0.3
432
Normal
0.3
951
Tumor
0.3
514
Normal
0.3
573
Tumor
0.3
666
Normal
0.3
1041
Tumor
0.3
162
Normal
0.3
388
Normal
0.3
574
Normal
0.3
278
Normal
0.3
858
Normal
0.3
314
Normal
0.2
523
Tumor
0.2
313
Tumor
0.2
526
Normal
0.2
715
Tumor
0.2
648
Normal
0.2
964
Normal
0.2
664
Normal
0.2
813
Tumor
0.2
392
Normal
0.2
1013
Tumor
0.2
467
Tumor
0.2
513
Tumor
0.2
1015
Tumor
0.2
217
Tumor
0.2
135
Tumor
0.2
137
Tumor
0.2
1042
Normal
0.2
568
Normal
0.2
786
Normal
0.2
433
Tumor
0.2
482
Normal
0.2
518
Normal
0.2
911
Tumor
0.2
227
Tumor
0.2
1044
Normal
0.2
212
Normal
0.2
862
Normal
0.2
462
Normal
0.2
464
Normal
0.2
515
Tumor
0.2
342
Normal
0.2
968
Normal
0.2
344
Normal
0.2
221
Tumor
0.2
958
Normal
0.2
145
Tumor
0.2
914
Normal
0.2
966
Normal
0.2
452
Normal
0.2
491
Tumor
0.2
222
Normal
0.2
494
Normal
0.2
391
Tumor
0.2
617
Tumor
0.2
423
Tumor
0.2
665
Tumor
0.2
912
Normal
0.2
187
Tumor
0.2
455
Tumor
0.2
615
Tumor
0.2
128
Normal
0.2
434
Normal
0.2
537
Tumor
0.2
558
Normal
0.1
938
Normal
0.1
493
Tumor
0.1
1027
Tumor
0.1
943
Tumor
0.1
443
Tumor
0.1
385
Tumor
0.1
743
Tumor
0.1
923
Tumor
0.1
977
Tumor
0.1
978
Normal
0.1
881
Tumor
0.1
421
Tumor
0.1
471
Tumor
0.1
416
Normal
0.1
394
Normal
0.1
883
Tumor
0.1
111
Normal
0.1
954
Normal
0.1
662
Normal
0.1
386
Normal
0.1
1032
Normal
0.1
865
Tumor
0.1
431
Tumor
0.1
218
Normal
0.1
286
Normal
0.1
424
Normal
0.1
627
Tumor
0.1
746
Normal
0.1
413
Tumor
0.1
963
Tumor
0.1
728
Normal
0.1
864
Normal
0.1
563
Tumor
0.1
224
Normal
0.1
196
Normal
0.1
284
Normal
0.1
917
Tumor
0.1
484
Normal
0.1
572
Normal
0.1
861
Tumor
0.1
824
Normal
0.1
641
Tumor
0.1
982
Normal
0.1
672
Normal
0.1
647
Tumor
0.1
428
Normal
0.1
882
Normal
0.1
1026
Normal
0.1
952
Normal
0.1
695
Tumor
0.1
341
Tumor
0.1
884
Normal
0.1
944
Normal
0.1
232
Normal
0.1
663
Tumor
0.1
636
Normal
0.1
878
Normal
0.1
468
Normal
0.0
343
Tumor
0.0
984
Normal
0.0
231
Tumor
0.0
524
Normal
0.0
866
Normal
0.0
472
Normal
0.0
473
Tumor
0.0
536
Normal
0.0
877
Tumor
0.0
363
Tumor
0.0
976
Normal
0.0
671
Tumor
0.0
414
Normal
0.0
852
Normal
0.0
867
Tumor
0.0
1016
Normal
0.0
283
Tumor
0.0
214
Normal
0.0
874
Normal
0.0
778
Normal
0.0
628
Normal
0.0
528
Normal
0.0
356
Normal
0.0
131
Tumor
0.0
975
Tumor
0.0
327
Tumor
0.0
488
Normal
0.0
926
Normal
0.0
474
Normal
0.0
465
Tumor
0.0
451
Tumor
0.0
564
Normal
0.0
953
Tumor
0.0
422
Normal
0.0
642
Normal
0.0
1021
Tumor
0.0
534
Normal
0.0
271
Tumor
0.0
756
Normal
0.0
823
Tumor
0.0
616
Normal
0.0
487
Tumor
0.0
477
Tumor
0.0
124
Normal
0.0
516
Normal
0.0
554
Normal
-0.1
191
Tumor
-0.1
268
Normal
-0.1
742
Normal
-0.1
814
Normal
-0.1
114
Normal
-0.1
262
Normal
-0.1
1046
Normal
-0.1
937
Tumor
-0.1
483
Tumor
-0.1
618
Normal
-0.1
1028
Normal
-0.1
517
Tumor
-0.1
956
Normal
-0.1
146
Normal
-0.1
261
Tumor
-0.1
426
Normal
-0.1
816
Normal
-0.1
723
Tumor
-0.1
737
Tumor
-0.1
744
Normal
-0.1
785
Tumor
-0.1
411
Tumor
-0.1
258
Normal
-0.1
741
Tumor
-0.1
125
Tumor
-0.1
925
Tumor
-0.1
142
Normal
-0.1
1043
Tumor
-0.1
755
Tumor
-0.1
448
Normal
-0.1
112
Tumor
-0.1
698
Normal
-0.1
383
Tumor
-0.1
546
Normal
-0.1
257
Tumor
-0.2
738
Normal
-0.2
922
Normal
-0.2
492
Normal
-0.2
921
Tumor
-0.2
924
Normal
-0.2
365
Tumor
-0.2
478
Normal
-0.2
384
Normal
-0.2
724
Normal
-0.2
498
Normal
-0.2
267
Tumor
-0.2
171
Tumor
-0.2
364
Normal
-0.2
635
Tumor
-0.2
412
Normal
-0.2
138
Normal
-0.2
132
Normal
-0.2
918
Normal
-0.2
538
Normal
-0.2
545
Tumor
-0.2
857
Tumor
-0.3
553
Tumor
-0.3
136
Normal
-0.3
195
Tumor
-0.3
915
Tumor
-0.3
415
Tumor
-0.3
362
Normal
-0.3
368
Normal
-0.3
387
Tumor
-0.3
361
Tumor
-0.3
127
Tumor
-0.3
126
Normal
-0.3
272
Normal
-0.3
113
Tumor
-0.3
818
Normal
-0.3
351
Tumor
-0.3
777
Tumor
-0.4
916
Normal
-0.4
497
Tumor
-0.4
355
Tumor
-0.4
425
Tumor
-0.4
745
Tumor
-0.4
366
Normal
-0.4
213
Tumor
-0.4
535
Tumor
-0.4
957
Tumor
-0.5
123
Tumor
-0.6
367
Tumor
-0.7
376
Normal
-0.7
375
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
