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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HP1BP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
97.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
95.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
91.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
83.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
72.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
72.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
72.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
65.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
59.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
58.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
54.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
39.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HP1BP3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.9
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
92.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
91.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
82.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
81.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
79.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
73.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
69.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
68.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
68.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
63.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
61.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
61.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
60.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
59.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
56.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
55.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
53.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
52.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
51.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
50.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
50.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
47.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
43.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.0
695
Tumor
0.9
685
Tumor
0.7
277
Tumor
0.7
192
Normal
0.7
533
Tumor
0.7
571
Tumor
0.6
865
Tumor
0.6
431
Tumor
0.6
1021
Tumor
0.6
663
Tumor
0.6
977
Tumor
0.6
161
Tumor
0.6
112
Tumor
0.6
863
Tumor
0.5
823
Tumor
0.5
185
Tumor
0.5
427
Tumor
0.5
741
Tumor
0.5
383
Tumor
0.5
483
Tumor
0.5
355
Tumor
0.5
135
Tumor
0.5
444
Normal
0.4
515
Tumor
0.4
744
Normal
0.4
493
Tumor
0.4
777
Tumor
0.4
375
Tumor
0.4
478
Normal
0.4
497
Tumor
0.4
487
Tumor
0.4
984
Normal
0.4
131
Tumor
0.4
1027
Tumor
0.4
737
Tumor
0.3
878
Normal
0.3
357
Tumor
0.3
563
Tumor
0.3
492
Normal
0.3
146
Normal
0.3
513
Tumor
0.3
727
Tumor
0.3
171
Tumor
0.3
465
Tumor
0.3
917
Tumor
0.3
538
Normal
0.3
433
Tumor
0.3
943
Tumor
0.3
423
Tumor
0.3
498
Normal
0.3
213
Tumor
0.3
672
Normal
0.3
545
Tumor
0.3
384
Normal
0.2
925
Tumor
0.2
573
Tumor
0.2
615
Tumor
0.2
743
Tumor
0.2
141
Tumor
0.2
954
Normal
0.2
818
Normal
0.2
461
Tumor
0.2
434
Normal
0.2
491
Tumor
0.2
341
Tumor
0.2
924
Normal
0.2
1013
Tumor
0.2
352
Normal
0.2
313
Tumor
0.2
938
Normal
0.2
516
Normal
0.2
527
Tumor
0.2
958
Normal
0.2
951
Tumor
0.2
963
Tumor
0.2
867
Tumor
0.2
342
Normal
0.2
386
Normal
0.2
1014
Normal
0.2
881
Tumor
0.2
477
Tumor
0.2
916
Normal
0.2
536
Normal
0.2
857
Tumor
0.2
467
Tumor
0.2
953
Tumor
0.2
1032
Normal
0.2
866
Normal
0.2
923
Tumor
0.2
344
Normal
0.2
472
Normal
0.1
1041
Tumor
0.1
874
Normal
0.1
852
Normal
0.1
298
Normal
0.1
343
Tumor
0.1
785
Tumor
0.1
882
Normal
0.1
456
Normal
0.1
188
Normal
0.1
911
Tumor
0.1
716
Normal
0.1
1031
Tumor
0.1
662
Normal
0.1
261
Tumor
0.1
421
Tumor
0.1
312
Normal
0.1
546
Normal
0.1
424
Normal
0.1
224
Normal
0.1
411
Tumor
0.1
354
Normal
0.1
412
Normal
0.1
884
Normal
0.1
816
Normal
0.1
435
Tumor
0.1
231
Tumor
0.1
415
Tumor
0.1
824
Normal
0.1
311
Tumor
0.1
426
Normal
0.1
1044
Normal
0.1
364
Normal
0.1
455
Tumor
0.1
297
Tumor
0.1
365
Tumor
0.1
915
Tumor
0.1
922
Normal
0.1
451
Tumor
0.1
883
Tumor
0.1
257
Tumor
0.1
664
Normal
0.1
443
Tumor
0.1
778
Normal
0.1
721
Tumor
0.1
268
Normal
0.1
572
Normal
0.1
481
Tumor
0.1
126
Normal
0.1
921
Tumor
0.1
362
Normal
0.1
474
Normal
0.1
464
Normal
0.1
952
Normal
0.1
686
Normal
0.0
912
Normal
0.0
574
Normal
0.0
534
Normal
0.0
482
Normal
0.0
436
Normal
0.0
557
Tumor
0.0
432
Normal
0.0
488
Normal
0.0
918
Normal
0.0
484
Normal
0.0
332
Normal
0.0
738
Normal
0.0
955
Tumor
0.0
212
Normal
0.0
1026
Normal
0.0
746
Normal
0.0
462
Normal
0.0
968
Normal
0.0
524
Normal
0.0
361
Tumor
0.0
494
Normal
0.0
714
Normal
0.0
196
Normal
0.0
314
Normal
0.0
148
Normal
0.0
162
Normal
0.0
468
Normal
0.0
448
Normal
0.0
147
Tumor
0.0
964
Normal
0.0
211
Tumor
0.0
223
Tumor
0.0
976
Normal
0.0
446
Normal
0.0
956
Normal
0.0
756
Normal
0.0
463
Tumor
0.0
142
Normal
0.0
387
Tumor
0.0
864
Normal
0.0
428
Normal
0.0
114
Normal
0.0
975
Tumor
0.0
422
Normal
0.0
628
Normal
0.0
328
Normal
0.0
376
Normal
0.0
447
Tumor
0.0
944
Normal
0.0
666
Normal
0.0
278
Normal
0.0
214
Normal
0.0
445
Tumor
0.0
862
Normal
0.0
554
Normal
0.0
858
Normal
0.0
466
Normal
0.0
124
Normal
0.0
138
Normal
0.0
366
Normal
0.0
195
Tumor
0.0
327
Tumor
0.0
353
Tumor
0.0
965
Tumor
0.0
356
Normal
0.0
723
Tumor
0.0
396
Normal
0.0
123
Tumor
0.0
564
Normal
0.0
696
Normal
-0.1
1022
Normal
-0.1
514
Normal
-0.1
525
Tumor
-0.1
786
Normal
-0.1
394
Normal
-0.1
817
Tumor
-0.1
648
Normal
-0.1
1045
Tumor
-0.1
136
Normal
-0.1
414
Normal
-0.1
413
Tumor
-0.1
937
Tumor
-0.1
926
Normal
-0.1
1016
Normal
-0.1
868
Normal
-0.1
385
Tumor
-0.1
528
Normal
-0.1
221
Tumor
-0.1
742
Normal
-0.1
722
Normal
-0.1
877
Tumor
-0.1
813
Tumor
-0.1
111
Normal
-0.1
272
Normal
-0.1
618
Normal
-0.1
284
Normal
-0.1
558
Normal
-0.1
728
Normal
-0.1
978
Normal
-0.1
388
Normal
-0.1
617
Tumor
-0.1
473
Tumor
-0.1
814
Normal
-0.1
392
Normal
-0.1
358
Normal
-0.1
132
Normal
-0.1
982
Normal
-0.1
1042
Normal
-0.1
186
Normal
-0.1
1028
Normal
-0.1
1015
Tumor
-0.1
567
Tumor
-0.1
635
Tumor
-0.1
966
Normal
-0.1
172
Normal
-0.1
368
Normal
-0.1
913
Tumor
-0.1
698
Normal
-0.1
416
Normal
-0.1
518
Normal
-0.1
715
Tumor
-0.1
517
Tumor
-0.1
642
Normal
-0.1
222
Normal
-0.2
616
Normal
-0.2
283
Tumor
-0.2
641
Tumor
-0.2
636
Normal
-0.2
218
Normal
-0.2
535
Tumor
-0.2
861
Tumor
-0.2
568
Normal
-0.2
395
Tumor
-0.2
452
Normal
-0.2
661
Tumor
-0.2
228
Normal
-0.2
267
Tumor
-0.2
137
Tumor
-0.2
647
Tumor
-0.2
128
Normal
-0.2
697
Tumor
-0.2
471
Tumor
-0.2
125
Tumor
-0.2
553
Tumor
-0.2
127
Tumor
-0.2
914
Normal
-0.2
526
Normal
-0.2
1046
Normal
-0.2
232
Normal
-0.2
981
Tumor
-0.3
191
Tumor
-0.3
262
Normal
-0.3
187
Tumor
-0.3
873
Tumor
-0.3
713
Tumor
-0.3
271
Tumor
-0.3
258
Normal
-0.3
724
Normal
-0.3
217
Tumor
-0.3
755
Tumor
-0.3
627
Tumor
-0.3
851
Tumor
-0.3
665
Tumor
-0.3
227
Tumor
-0.4
367
Tumor
-0.4
286
Normal
-0.4
113
Tumor
-0.4
331
Tumor
-0.4
351
Tumor
-0.4
1025
Tumor
-0.4
523
Tumor
-0.4
363
Tumor
-0.4
671
Tumor
-0.4
1043
Tumor
-0.4
983
Tumor
-0.5
145
Tumor
-0.5
815
Tumor
-0.5
957
Tumor
-0.5
537
Tumor
-0.6
285
Tumor
-0.6
967
Tumor
-0.7
393
Tumor
-0.7
391
Tumor
-0.8
745
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
