MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.7 nTPM
HPA Brain:168.7 nTPM
GTEx:64.7 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:79.7 nTPM
Mouse:135.9 nTPM
Allen mouse:12.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 168.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.0
1833 Male, age 53, unknown 167.5
1830 Male, age 51, unknown 166.9
2411 Female, age 72, unknown 165.6
1870 Female, age 42, unknown 165.5
2828 Female, age 72, unknown 160.2
2666 Male, age 74, left hemisphere 157.4
2219 Male, age 76, both hemispheres 156.8
2586 Male, age 75, left hemisphere 154.4
1827 Male, age 72, unknown 148.2
2019 Male, age 18, unknown 147.5
Dorsal raphe nucleus
nTPM: 149.2
2750 Male, age 76, both hemispheres 160.8
2016 Female, age 72, unknown 159.5
1828 Male, age 53, unknown 146.6
2298 Female, age 72, unknown 140.4
2047 Male, age 72, unknown 138.5
Inferior colliculus
nTPM: 157.5
2849 Male, age 72, unknown 163.4
1848 Female, age 42, unknown 158.5
1890 Male, age 53, unknown 154.1
2097 Female, age 72, unknown 154.0
Median raphe nucleus
nTPM: 157.4
2220 Male, age 76, midline 157.4
Periaquaductal grey, anterior
nTPM: 159.3
1947 Male, age 18, unknown 163.2
2502 Female, age 75, unknown 162.7
1795 Male, age 51, unknown 151.9
Periaquaductal grey, dorsal
nTPM: 148.6
2850 Male, age 76, both hemispheres 152.8
1840 Male, age 53, unknown 151.7
2464 Female, age 72, unknown 146.8
1831 Male, age 72, unknown 143.0
Periaquaductal grey, lateral
nTPM: 150.2
2140 Male, age 76, both hemispheres 154.5
2053 Male, age 18, unknown 150.4
2272 Male, age 74, both hemispheres 145.8
Pretectal area
nTPM: 157.2
2407 Male, age 75, both hemispheres 174.4
2825 Male, age 18, unknown 168.9
1815 Male, age 53, unknown 167.8
2316 Male, age 76, right hemisphere 164.5
2667 Female, age 75, unknown 164.4
2224 Female, age 72, unknown 156.7
1817 Female, age 42, unknown 151.1
2007 Male, age 72, unknown 150.3
2273 Male, age 74, both hemispheres 150.1
1816 Male, age 51, unknown 142.8
1944 Female, age 72, unknown 138.3
Red nucleus
nTPM: 168.7
2503 Female, age 72, unknown 184.3
2823 Male, age 76, right hemisphere 181.4
1904 Male, age 53, unknown 177.0
1821 Female, age 72, unknown 171.2
1865 Male, age 51, unknown 171.2
2227 Male, age 72, unknown 170.1
2769 Male, age 72, unknown 166.4
2725 Female, age 75, unknown 163.2
2584 Male, age 75, left hemisphere 162.0
1954 Female, age 42, unknown 160.5
2785 Male, age 18, unknown 159.3
2588 Male, age 74, left hemisphere 157.2
Substantia nigra
nTPM: 155.9
2241 Male, age 72, unknown 179.0
2699 Male, age 18, unknown 165.7
2583 Male, age 75, right hemisphere 160.6
1851 Male, age 51, unknown 159.9
2409 Female, age 72, unknown 156.0
2665 Male, age 74, both hemispheres 151.5
1916 Female, age 42, unknown 151.4
1889 Female, age 72, unknown 147.6
2590 Female, age 75, unknown 147.5
1941 Male, age 53, unknown 139.9
Superior colliculus
nTPM: 156.7
1913 Female, age 42, unknown 178.1
1995 Male, age 72, unknown 164.1
2587 Male, age 74, left hemisphere 162.7
1839 Male, age 51, unknown 160.8
2668 Female, age 75, unknown 158.8
1895 Male, age 76, right hemisphere 155.4
1796 Male, age 53, unknown 151.8
2261 Male, age 18, unknown 151.2
2664 Male, age 75, both hemispheres 142.6
2087 Female, age 72, unknown 141.9
Ventral tegmental area
nTPM: 155.7
2223 Female, age 72, unknown 163.0
1942 Male, age 51, unknown 158.8
2218 Male, age 76, both hemispheres 154.5
2410 Female, age 72, unknown 154.0
2021 Male, age 53, unknown 152.8
1915 Female, age 42, unknown 151.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.7
Samples: 139

Max nTPM: 142.3
Min nTPM: 35.3
Std nTPM: 13.5
Median nTPM: 62.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 142.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 102.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 93.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 88.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 87.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 85.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 84.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 84.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 83.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.8
FF:10158-103A5 76 years, female 143.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 71.9
Sample A Female 78.2
Sample B Female 72.2
Sample C Male 76.7
Sample D Male 71.9
Midbrain
nTPM: 79.7
Samples: 4

Max nTPM: 90.1
Min nTPM: 73.8
Sample A Female 90.1
Sample B Female 73.8
Sample C Male 77.7
Sample D Male 77.3
Periaqueductal gray
nTPM: 72.5
Samples: 3

Max nTPM: 77.9
Min nTPM: 67.8
Sample B Female 71.8
Sample C Male 77.9
Sample D Male 67.8
Superior colliculi
nTPM: 76.4
Samples: 4

Max nTPM: 82.7
Min nTPM: 73.4
Sample A Female 82.7
Sample B Female 74.3
Sample C Male 73.4
Sample D Male 75.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 135.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.9
Samples: 4

Max nTPM: 140.7
Min nTPM: 129.6
Sample A Male 140.0
Sample B Male 133.2
Sample C Female 140.7
Sample D Female 129.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.8
81599666 Antisense, RP_071219_02_F03, Mouse strain C57BL/6J (56 days, male) 12.8

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