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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
0.7
1027
Tumor
0.7
1013
Tumor
0.6
571
Tumor
0.6
261
Tumor
0.6
557
Tumor
0.6
435
Tumor
0.5
685
Tumor
0.5
481
Tumor
0.5
351
Tumor
0.5
741
Tumor
0.5
257
Tumor
0.4
857
Tumor
0.4
627
Tumor
0.4
445
Tumor
0.4
721
Tumor
0.4
433
Tumor
0.4
851
Tumor
0.4
861
Tumor
0.4
665
Tumor
0.4
863
Tumor
0.4
467
Tumor
0.4
873
Tumor
0.4
112
Tumor
0.4
125
Tumor
0.3
411
Tumor
0.3
527
Tumor
0.3
375
Tumor
0.3
383
Tumor
0.3
393
Tumor
0.3
724
Normal
0.3
1015
Tumor
0.3
123
Tumor
0.3
785
Tumor
0.3
135
Tumor
0.3
361
Tumor
0.3
745
Tumor
0.3
635
Tumor
0.3
913
Tumor
0.3
127
Tumor
0.3
977
Tumor
0.3
451
Tumor
0.3
815
Tumor
0.2
357
Tumor
0.2
697
Tumor
0.2
332
Normal
0.2
331
Tumor
0.2
981
Tumor
0.2
387
Tumor
0.2
615
Tumor
0.2
128
Normal
0.2
491
Tumor
0.2
497
Tumor
0.2
231
Tumor
0.2
227
Tumor
0.2
311
Tumor
0.2
452
Normal
0.2
277
Tumor
0.2
145
Tumor
0.2
466
Normal
0.2
965
Tumor
0.2
314
Normal
0.2
431
Tumor
0.2
384
Normal
0.2
113
Tumor
0.2
111
Normal
0.2
267
Tumor
0.2
713
Tumor
0.2
137
Tumor
0.2
171
Tumor
0.2
647
Tumor
0.2
376
Normal
0.2
915
Tumor
0.2
468
Normal
0.2
114
Normal
0.2
464
Normal
0.2
414
Normal
0.2
368
Normal
0.2
126
Normal
0.1
648
Normal
0.1
813
Tumor
0.1
513
Tumor
0.1
868
Normal
0.1
392
Normal
0.1
957
Tumor
0.1
172
Normal
0.1
525
Tumor
0.1
567
Tumor
0.1
217
Tumor
0.1
362
Normal
0.1
213
Tumor
0.1
953
Tumor
0.1
283
Tumor
0.1
327
Tumor
0.1
422
Normal
0.1
434
Normal
0.1
978
Normal
0.1
286
Normal
0.1
365
Tumor
0.1
358
Normal
0.1
436
Normal
0.1
865
Tumor
0.1
777
Tumor
0.1
662
Normal
0.1
636
Normal
0.1
196
Normal
0.1
937
Tumor
0.1
465
Tumor
0.1
558
Normal
0.1
278
Normal
0.1
187
Tumor
0.1
395
Tumor
0.1
124
Normal
0.1
573
Tumor
0.1
147
Tumor
0.1
867
Tumor
0.1
222
Normal
0.1
427
Tumor
0.1
268
Normal
0.1
428
Normal
0.1
388
Normal
0.1
722
Normal
0.1
214
Normal
0.1
191
Tumor
0.1
824
Normal
0.1
232
Normal
0.1
462
Normal
0.1
352
Normal
0.1
666
Normal
0.1
424
Normal
0.1
423
Tumor
0.1
564
Normal
0.1
444
Normal
0.1
224
Normal
0.1
432
Normal
0.1
672
Normal
0.1
353
Tumor
0.1
426
Normal
0.1
218
Normal
0.1
641
Tumor
0.1
354
Normal
0.1
132
Normal
0.1
258
Normal
0.1
955
Tumor
0.1
394
Normal
0.0
262
Normal
0.0
425
Tumor
0.0
366
Normal
0.0
456
Normal
0.0
1016
Normal
0.0
911
Tumor
0.0
148
Normal
0.0
686
Normal
0.0
443
Tumor
0.0
421
Tumor
0.0
1045
Tumor
0.0
141
Tumor
0.0
852
Normal
0.0
963
Tumor
0.0
391
Tumor
0.0
616
Normal
0.0
221
Tumor
0.0
786
Normal
0.0
568
Normal
0.0
664
Normal
0.0
446
Normal
0.0
188
Normal
0.0
923
Tumor
0.0
528
Normal
0.0
642
Normal
0.0
212
Normal
0.0
1014
Normal
0.0
926
Normal
0.0
984
Normal
0.0
186
Normal
0.0
284
Normal
0.0
343
Tumor
0.0
912
Normal
0.0
618
Normal
0.0
514
Normal
0.0
396
Normal
0.0
344
Normal
0.0
864
Normal
0.0
742
Normal
0.0
982
Normal
0.0
663
Tumor
0.0
272
Normal
0.0
526
Normal
0.0
814
Normal
0.0
1044
Normal
0.0
356
Normal
0.0
228
Normal
0.0
866
Normal
0.0
386
Normal
0.0
756
Normal
0.0
884
Normal
0.0
1046
Normal
0.0
162
Normal
0.0
136
Normal
0.0
954
Normal
0.0
728
Normal
0.0
628
Normal
0.0
328
Normal
0.0
964
Normal
0.0
298
Normal
0.0
918
Normal
0.0
161
Tumor
0.0
487
Tumor
0.0
192
Normal
0.0
524
Normal
0.0
463
Tumor
0.0
921
Tumor
0.0
914
Normal
0.0
223
Tumor
0.0
696
Normal
0.0
312
Normal
0.0
755
Tumor
0.0
916
Normal
0.0
917
Tumor
0.0
572
Normal
0.0
367
Tumor
0.0
341
Tumor
0.0
195
Tumor
0.0
944
Normal
0.0
858
Normal
0.0
956
Normal
0.0
744
Normal
0.0
138
Normal
0.0
816
Normal
0.0
342
Normal
0.0
968
Normal
0.0
534
Normal
0.0
938
Normal
0.0
142
Normal
0.0
976
Normal
0.0
671
Tumor
0.0
924
Normal
0.0
874
Normal
0.0
922
Normal
0.0
714
Normal
0.0
412
Normal
0.0
983
Tumor
-0.1
778
Normal
-0.1
746
Normal
-0.1
723
Tumor
-0.1
477
Tumor
-0.1
355
Tumor
-0.1
738
Normal
-0.1
574
Normal
-0.1
882
Normal
-0.1
515
Tumor
-0.1
474
Normal
-0.1
952
Normal
-0.1
146
Normal
-0.1
518
Normal
-0.1
1028
Normal
-0.1
1021
Tumor
-0.1
661
Tumor
-0.1
862
Normal
-0.1
494
Normal
-0.1
211
Tumor
-0.1
448
Normal
-0.1
878
Normal
-0.1
716
Normal
-0.1
535
Tumor
-0.1
472
Normal
-0.1
413
Tumor
-0.1
416
Normal
-0.1
943
Tumor
-0.1
1032
Normal
-0.1
1042
Normal
-0.1
881
Tumor
-0.1
478
Normal
-0.1
455
Tumor
-0.1
297
Tumor
-0.1
493
Tumor
-0.1
516
Normal
-0.1
1043
Tumor
-0.1
1026
Normal
-0.1
1022
Normal
-0.1
966
Normal
-0.1
546
Normal
-0.1
737
Tumor
-0.1
364
Normal
-0.1
818
Normal
-0.1
447
Tumor
-0.1
488
Normal
-0.1
498
Normal
-0.1
715
Tumor
-0.1
185
Tumor
-0.1
385
Tumor
-0.1
925
Tumor
-0.1
271
Tumor
-0.1
958
Normal
-0.1
537
Tumor
-0.1
698
Normal
-0.1
823
Tumor
-0.1
563
Tumor
-0.2
482
Normal
-0.2
415
Tumor
-0.2
536
Normal
-0.2
285
Tumor
-0.2
975
Tumor
-0.2
617
Tumor
-0.2
695
Tumor
-0.2
484
Normal
-0.2
538
Normal
-0.2
883
Tumor
-0.2
554
Normal
-0.2
473
Tumor
-0.2
817
Tumor
-0.2
523
Tumor
-0.2
1041
Tumor
-0.2
461
Tumor
-0.2
492
Normal
-0.2
727
Tumor
-0.2
545
Tumor
-0.3
533
Tumor
-0.3
483
Tumor
-0.3
1025
Tumor
-0.3
951
Tumor
-0.4
743
Tumor
-0.4
553
Tumor
-0.4
1031
Tumor
-0.4
363
Tumor
-0.4
877
Tumor
-0.5
967
Tumor
-0.5
471
Tumor
-0.5
517
Tumor
-0.6
131
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
