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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXL12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXL12 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.6
463
Tumor
1.3
217
Tumor
1.1
285
Tumor
1.0
698
Normal
1.0
1045
Tumor
0.9
221
Tumor
0.9
641
Tumor
0.9
695
Tumor
0.9
967
Tumor
0.8
743
Tumor
0.8
131
Tumor
0.8
1032
Normal
0.8
331
Tumor
0.8
465
Tumor
0.8
1031
Tumor
0.7
983
Tumor
0.7
447
Tumor
0.7
1043
Tumor
0.6
815
Tumor
0.6
535
Tumor
0.6
425
Tumor
0.6
738
Normal
0.6
1022
Normal
0.6
448
Normal
0.5
391
Tumor
0.5
713
Tumor
0.5
423
Tumor
0.5
685
Tumor
0.5
715
Tumor
0.5
977
Tumor
0.5
192
Normal
0.5
1015
Tumor
0.4
877
Tumor
0.4
742
Normal
0.4
473
Tumor
0.4
376
Normal
0.4
271
Tumor
0.4
862
Normal
0.4
1028
Normal
0.4
1046
Normal
0.4
536
Normal
0.3
728
Normal
0.3
351
Tumor
0.3
851
Tumor
0.3
727
Tumor
0.3
534
Normal
0.3
554
Normal
0.3
737
Tumor
0.3
361
Tumor
0.3
355
Tumor
0.3
1042
Normal
0.3
665
Tumor
0.2
868
Normal
0.2
211
Tumor
0.2
452
Normal
0.2
1013
Tumor
0.2
141
Tumor
0.2
363
Tumor
0.2
921
Tumor
0.2
528
Normal
0.2
922
Normal
0.2
686
Normal
0.2
365
Tumor
0.2
938
Normal
0.2
367
Tumor
0.2
723
Tumor
0.2
368
Normal
0.2
984
Normal
0.2
965
Tumor
0.2
494
Normal
0.2
451
Tumor
0.2
944
Normal
0.2
366
Normal
0.2
387
Tumor
0.2
914
Normal
0.2
362
Normal
0.2
526
Normal
0.2
487
Tumor
0.2
924
Normal
0.2
384
Normal
0.2
956
Normal
0.2
1026
Normal
0.2
671
Tumor
0.1
546
Normal
0.1
498
Normal
0.1
424
Normal
0.1
297
Tumor
0.1
455
Tumor
0.1
955
Tumor
0.1
488
Normal
0.1
431
Tumor
0.1
952
Normal
0.1
484
Normal
0.1
195
Tumor
0.1
923
Tumor
0.1
724
Normal
0.1
963
Tumor
0.1
661
Tumor
0.1
867
Tumor
0.1
468
Normal
0.1
978
Normal
0.1
277
Tumor
0.1
191
Tumor
0.1
642
Normal
0.1
666
Normal
0.1
716
Normal
0.1
222
Normal
0.1
232
Normal
0.1
286
Normal
0.1
516
Normal
0.1
817
Tumor
0.1
415
Tumor
0.1
697
Tumor
0.1
881
Tumor
0.1
746
Normal
0.1
218
Normal
0.1
514
Normal
0.1
428
Normal
0.1
756
Normal
0.1
314
Normal
0.0
411
Tumor
0.0
517
Tumor
0.0
926
Normal
0.0
446
Normal
0.0
722
Normal
0.0
913
Tumor
0.0
858
Normal
0.0
196
Normal
0.0
615
Tumor
0.0
427
Tumor
0.0
223
Tumor
0.0
426
Normal
0.0
137
Tumor
0.0
464
Normal
0.0
813
Tumor
0.0
132
Normal
0.0
445
Tumor
0.0
538
Normal
0.0
227
Tumor
0.0
421
Tumor
0.0
964
Normal
0.0
618
Normal
0.0
714
Normal
0.0
864
Normal
0.0
456
Normal
0.0
186
Normal
0.0
1016
Normal
0.0
414
Normal
0.0
911
Tumor
0.0
283
Tumor
0.0
284
Normal
0.0
224
Normal
0.0
954
Normal
0.0
518
Normal
0.0
138
Normal
0.0
861
Tumor
0.0
356
Normal
0.0
213
Tumor
0.0
981
Tumor
-0.1
491
Tumor
-0.1
433
Tumor
-0.1
1044
Normal
-0.1
1041
Tumor
-0.1
436
Normal
-0.1
435
Tumor
-0.1
267
Tumor
-0.1
343
Tumor
-0.1
636
Normal
-0.1
874
Normal
-0.1
915
Tumor
-0.1
648
Normal
-0.1
553
Tumor
-0.1
976
Normal
-0.1
472
Normal
-0.1
395
Tumor
-0.1
385
Tumor
-0.1
461
Tumor
-0.1
214
Normal
-0.1
393
Tumor
-0.1
392
Normal
-0.1
916
Normal
-0.1
873
Tumor
-0.1
721
Tumor
-0.1
375
Tumor
-0.1
332
Normal
-0.1
912
Normal
-0.1
778
Normal
-0.1
492
Normal
-0.1
966
Normal
-0.1
568
Normal
-0.1
171
Tumor
-0.1
228
Normal
-0.1
663
Tumor
-0.1
958
Normal
-0.1
477
Tumor
-0.1
672
Normal
-0.1
434
Normal
-0.1
664
Normal
-0.1
383
Tumor
-0.1
471
Tumor
-0.1
364
Normal
-0.1
616
Normal
-0.1
953
Tumor
-0.1
497
Tumor
-0.1
422
Normal
-0.1
357
Tumor
-0.1
328
Normal
-0.1
311
Tumor
-0.1
628
Normal
-0.1
975
Tumor
-0.1
312
Normal
-0.1
145
Tumor
-0.1
188
Normal
-0.1
968
Normal
-0.1
136
Normal
-0.1
262
Normal
-0.1
545
Tumor
-0.1
786
Normal
-0.1
617
Tumor
-0.1
146
Normal
-0.1
627
Tumor
-0.1
172
Normal
-0.1
918
Normal
-0.1
982
Normal
-0.2
917
Tumor
-0.2
353
Tumor
-0.2
537
Tumor
-0.2
483
Tumor
-0.2
432
Normal
-0.2
1014
Normal
-0.2
327
Tumor
-0.2
943
Tumor
-0.2
696
Normal
-0.2
185
Tumor
-0.2
394
Normal
-0.2
388
Normal
-0.2
268
Normal
-0.2
444
Normal
-0.2
515
Tumor
-0.2
866
Normal
-0.2
662
Normal
-0.2
524
Normal
-0.2
951
Tumor
-0.2
647
Tumor
-0.2
816
Normal
-0.2
1025
Tumor
-0.2
744
Normal
-0.2
878
Normal
-0.2
416
Normal
-0.2
852
Normal
-0.2
298
Normal
-0.2
258
Normal
-0.2
785
Tumor
-0.2
412
Normal
-0.2
571
Tumor
-0.2
882
Normal
-0.2
272
Normal
-0.2
386
Normal
-0.2
823
Tumor
-0.2
755
Tumor
-0.2
212
Normal
-0.2
396
Normal
-0.2
635
Tumor
-0.2
142
Normal
-0.2
482
Normal
-0.2
883
Tumor
-0.2
573
Tumor
-0.2
466
Normal
-0.3
162
Normal
-0.3
481
Tumor
-0.3
474
Normal
-0.3
513
Tumor
-0.3
814
Normal
-0.3
462
Normal
-0.3
478
Normal
-0.3
937
Tumor
-0.3
467
Tumor
-0.3
857
Tumor
-0.3
824
Normal
-0.3
147
Tumor
-0.3
278
Normal
-0.4
572
Normal
-0.4
884
Normal
-0.4
148
Normal
-0.4
261
Tumor
-0.4
187
Tumor
-0.4
493
Tumor
-0.4
443
Tumor
-0.4
525
Tumor
-0.4
313
Tumor
-0.4
567
Tumor
-0.4
1027
Tumor
-0.4
863
Tumor
-0.4
574
Normal
-0.4
527
Tumor
-0.4
354
Normal
-0.4
257
Tumor
-0.4
341
Tumor
-0.4
161
Tumor
-0.4
563
Tumor
-0.4
523
Tumor
-0.4
925
Tumor
-0.4
741
Tumor
-0.4
135
Tumor
-0.4
1021
Tumor
-0.4
352
Normal
-0.4
865
Tumor
-0.5
533
Tumor
-0.5
818
Normal
-0.5
344
Normal
-0.5
564
Normal
-0.5
557
Tumor
-0.5
745
Tumor
-0.5
558
Normal
-0.5
777
Tumor
-0.6
342
Normal
-0.6
231
Tumor
-0.6
957
Tumor
-0.7
358
Normal
-0.8
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
