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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
102.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
98.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
86.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
84.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
79.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
74.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
73.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
73.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
72.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
71.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
68.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
66.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
64.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
61.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
60.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
59.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
58.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
57.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
56.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
56.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
55.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
55.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
52.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
51.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
50.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
50.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
48.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
47.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
47.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
47.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
47.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
45.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
44.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
43.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
42.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
41.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
41.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
40.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
40.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
37.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
35.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
34.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIN1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
76.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
72.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
63.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
59.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
50.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
49.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
1.0
777
Tumor
0.9
785
Tumor
0.9
487
Tumor
0.9
515
Tumor
0.8
355
Tumor
0.7
865
Tumor
0.7
465
Tumor
0.7
481
Tumor
0.7
463
Tumor
0.6
813
Tumor
0.6
741
Tumor
0.6
863
Tumor
0.6
277
Tumor
0.6
285
Tumor
0.5
327
Tumor
0.5
742
Normal
0.5
755
Tumor
0.5
482
Normal
0.5
365
Tumor
0.5
491
Tumor
0.5
527
Tumor
0.5
697
Tumor
0.5
915
Tumor
0.5
473
Tumor
0.5
513
Tumor
0.4
356
Normal
0.4
983
Tumor
0.4
523
Tumor
0.4
923
Tumor
0.4
483
Tumor
0.4
913
Tumor
0.4
867
Tumor
0.4
1013
Tumor
0.4
474
Normal
0.4
416
Normal
0.4
425
Tumor
0.4
737
Tumor
0.4
815
Tumor
0.4
357
Tumor
0.4
411
Tumor
0.4
1032
Normal
0.4
328
Normal
0.3
223
Tumor
0.3
545
Tumor
0.3
924
Normal
0.3
123
Tumor
0.3
954
Normal
0.3
958
Normal
0.3
615
Tumor
0.3
472
Normal
0.3
938
Normal
0.3
364
Normal
0.3
271
Tumor
0.3
851
Tumor
0.3
616
Normal
0.3
824
Normal
0.3
944
Normal
0.3
572
Normal
0.3
353
Tumor
0.3
484
Normal
0.3
1014
Normal
0.3
857
Tumor
0.3
128
Normal
0.3
412
Normal
0.3
445
Tumor
0.3
918
Normal
0.3
462
Normal
0.3
925
Tumor
0.3
568
Normal
0.3
415
Tumor
0.3
786
Normal
0.3
628
Normal
0.3
912
Normal
0.3
478
Normal
0.3
953
Tumor
0.3
413
Tumor
0.3
984
Normal
0.3
534
Normal
0.3
627
Tumor
0.3
617
Tumor
0.3
363
Tumor
0.3
137
Tumor
0.2
618
Normal
0.2
978
Normal
0.2
882
Normal
0.2
921
Tumor
0.2
455
Tumor
0.2
642
Normal
0.2
498
Normal
0.2
447
Tumor
0.2
738
Normal
0.2
131
Tumor
0.2
546
Normal
0.2
858
Normal
0.2
743
Tumor
0.2
1016
Normal
0.2
964
Normal
0.2
171
Tumor
0.2
878
Normal
0.2
114
Normal
0.2
818
Normal
0.2
746
Normal
0.2
536
Normal
0.2
488
Normal
0.2
518
Normal
0.2
884
Normal
0.2
852
Normal
0.2
861
Tumor
0.2
695
Tumor
0.2
492
Normal
0.2
448
Normal
0.2
723
Tumor
0.2
864
Normal
0.2
443
Tumor
0.2
383
Tumor
0.2
311
Tumor
0.2
756
Normal
0.2
881
Tumor
0.2
911
Tumor
0.2
132
Normal
0.2
778
Normal
0.2
1031
Tumor
0.2
955
Tumor
0.2
1027
Tumor
0.2
976
Normal
0.2
136
Normal
0.2
977
Tumor
0.2
141
Tumor
0.2
558
Normal
0.2
528
Normal
0.2
111
Normal
0.2
142
Normal
0.2
922
Normal
0.2
1022
Normal
0.2
494
Normal
0.2
1042
Normal
0.2
874
Normal
0.2
862
Normal
0.2
873
Tumor
0.1
375
Tumor
0.1
814
Normal
0.1
647
Tumor
0.1
968
Normal
0.1
436
Normal
0.1
982
Normal
0.1
267
Tumor
0.1
966
Normal
0.1
126
Normal
0.1
497
Tumor
0.1
916
Normal
0.1
956
Normal
0.1
1028
Normal
0.1
696
Normal
0.1
981
Tumor
0.1
1026
Normal
0.1
926
Normal
0.1
866
Normal
0.1
716
Normal
0.1
868
Normal
0.1
258
Normal
0.1
816
Normal
0.1
186
Normal
0.1
516
Normal
0.1
148
Normal
0.1
744
Normal
0.1
1015
Tumor
0.1
147
Tumor
0.1
211
Tumor
0.1
272
Normal
0.1
714
Normal
0.1
636
Normal
0.1
138
Normal
0.1
493
Tumor
0.1
571
Tumor
0.1
574
Normal
0.1
917
Tumor
0.1
162
Normal
0.1
232
Normal
0.1
564
Normal
0.1
648
Normal
0.1
554
Normal
0.1
1045
Tumor
0.1
728
Normal
0.1
557
Tumor
0.1
268
Normal
0.1
914
Normal
0.1
538
Normal
0.1
663
Tumor
0.1
686
Normal
0.1
967
Tumor
0.1
444
Normal
0.0
466
Normal
0.0
298
Normal
0.0
172
Normal
0.0
698
Normal
0.0
228
Normal
0.0
952
Normal
0.0
1041
Tumor
0.0
724
Normal
0.0
433
Tumor
0.0
358
Normal
0.0
124
Normal
0.0
221
Tumor
0.0
261
Tumor
0.0
471
Tumor
0.0
461
Tumor
0.0
344
Normal
0.0
641
Tumor
0.0
1025
Tumor
0.0
146
Normal
0.0
823
Tumor
0.0
212
Normal
0.0
227
Tumor
0.0
192
Normal
0.0
113
Tumor
0.0
214
Normal
0.0
145
Tumor
0.0
514
Normal
0.0
125
Tumor
0.0
1046
Normal
0.0
1044
Normal
0.0
188
Normal
0.0
537
Tumor
0.0
135
Tumor
0.0
434
Normal
0.0
396
Normal
0.0
662
Normal
0.0
422
Normal
0.0
366
Normal
0.0
362
Normal
0.0
127
Tumor
0.0
721
Tumor
0.0
423
Tumor
0.0
672
Normal
-0.1
222
Normal
-0.1
937
Tumor
-0.1
354
Normal
-0.1
284
Normal
-0.1
963
Tumor
-0.1
384
Normal
-0.1
218
Normal
-0.1
526
Normal
-0.1
727
Tumor
-0.1
224
Normal
-0.1
286
Normal
-0.1
187
Tumor
-0.1
1043
Tumor
-0.1
342
Normal
-0.1
426
Normal
-0.1
386
Normal
-0.1
395
Tumor
-0.1
666
Normal
-0.1
394
Normal
-0.1
213
Tumor
-0.1
722
Normal
-0.1
468
Normal
-0.1
283
Tumor
-0.1
877
Tumor
-0.1
524
Normal
-0.1
352
Normal
-0.1
464
Normal
-0.1
664
Normal
-0.1
332
Normal
-0.1
943
Tumor
-0.1
376
Normal
-0.1
161
Tumor
-0.1
456
Normal
-0.1
451
Tumor
-0.1
414
Normal
-0.1
278
Normal
-0.1
715
Tumor
-0.1
393
Tumor
-0.1
446
Normal
-0.1
883
Tumor
-0.1
635
Tumor
-0.1
553
Tumor
-0.2
361
Tumor
-0.2
297
Tumor
-0.2
467
Tumor
-0.2
392
Normal
-0.2
313
Tumor
-0.2
262
Normal
-0.2
196
Normal
-0.2
452
Normal
-0.2
312
Normal
-0.2
427
Tumor
-0.2
314
Normal
-0.2
428
Normal
-0.2
665
Tumor
-0.2
975
Tumor
-0.2
185
Tumor
-0.2
477
Tumor
-0.2
567
Tumor
-0.2
367
Tumor
-0.2
368
Normal
-0.2
421
Tumor
-0.2
424
Normal
-0.3
563
Tumor
-0.3
432
Normal
-0.3
535
Tumor
-0.3
745
Tumor
-0.3
217
Tumor
-0.3
195
Tumor
-0.3
388
Normal
-0.3
435
Tumor
-0.3
351
Tumor
-0.3
661
Tumor
-0.3
1021
Tumor
-0.3
112
Tumor
-0.3
965
Tumor
-0.4
573
Tumor
-0.4
525
Tumor
-0.4
957
Tumor
-0.4
387
Tumor
-0.4
391
Tumor
-0.4
533
Tumor
-0.5
191
Tumor
-0.5
517
Tumor
-0.5
713
Tumor
-0.5
385
Tumor
-0.5
341
Tumor
-0.5
951
Tumor
-0.5
331
Tumor
-0.6
257
Tumor
-0.6
231
Tumor
-0.6
343
Tumor
-0.7
817
Tumor
-0.7
685
Tumor
-0.7
671
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
